Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03880 aTGCACCACAACCATAATGTGTCTTCATGGTTGTGGATTGCTTTTCTAATTGCGGTCTCAACCACCACAGTTCATTGCAAAACTTCCTCCCAAGATGTTTCAGCCCTTAATGTCATGTATACCAGCTTGAATTCTCCCTCCAAACTCTCTGGTTGGAAATCAAGCGGTGGTGATCCTTGTGGTGACTCATGGGAAGGAATCAAATGTTCATCCTCATCTGTCACAGAAATAAAATTATCTGACCTGGGACTTAGTGGATCAGTGGGATACCAATTAGCAAGCTTAACATCAGTTACTTACTTTGATTTGAGCAACAACAACCTCAAGGGTGATATACCATATCAACTCCCTCCAAATGCTCGTGACATAGATCTTTCTAAGAACCAATTCAGTGGAAGTATACCGTATTCCATTTCTCAGATGAAAGAACTCAACTCTCTAAATCTTGCACATAATCAGCTCAATAACCAGCTGGGCGATATGTTTGGGAGCCTCACTAAACTCAAACAATTGGATGTTTCATTCAATTCATTATCAGGAAACCTGCCTCAGAGTTTAAAATCACTCAGAAACCTCAAGAAGATACATCTGCAAAACAATCAATTCTCTGGTTCACTAAATGTCCTTGCCAACCTTCCACTTGACGATGTGAATGTTGAGAACAACAAATTGACTGGTTGGGTTCCCGAGGAGTTAAAGGATATAAGTAACTTGAAAACTGGAGGAAACTCTTGGTCAACTGGGCGAGCACCACCTCCTCCCCCCGGTACACCTCATATCAAGCATTCCAAGAAAAAGGATGGAGAATCTGAAAAATCTGGAAAATCTGTTGTAATTGGAGTGATTATAGCAGGCATAGTTATTGTTGTGCTGGCCATAATCATAATTGTTGTTTCTCTTTCTAAAAGAAGGTCATCTGCACGTTCTTTACATCTCAGTGAGGAAGAGAGGCGTAGCCAGCACAGATCTTTTACGCCCCTTGCATCTCAGGAGTTATCTAAGGATCCATTTCCTTATACCACCACAGAAAACAAAGGATTTAATTGTAACGATTCCACTTCAGTTGACATAAAGGCTTTACAAAAAAGTCCATCGACTAGTGTTAGGTCATCAGTTTCTGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAAGCGTCTAAATTCTAGAAGAAGCACATCATTACGTTGTAATCCTTTTTCACTGGGAGAGTTGCAGATTGGTACTGCTAACTTTGCTTCAGGCCGACTTCTTGGTGAAGGATCCATTGGACGTGTTTATCGTGCCAAATATGCTGATGGAAAGGTATTGGCTGTTAAAAAAATCAATCCTTCACTTTTTGATGACGGTCCTCCCGAGGAATTCTCTAAGATTGTATCAAGCATCTCCAAACTTCGTCATCCAAATATTGCTGAGCTTGTAGGTCATTGTTCAGAACAGGAGCACATGTTAGTATATGATTATTTCAGAAATGGTTCTCTCCACGACTTTTTACATTTATCGGATGACTTCAGCAAACCACTAACTTGGAACACCAGAATCAGAATTGCATTGGGAACTGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCTCCTCCATTAGTTCACAAGAATATCAAATCCGCCAATATTTTGCTTGACACAGATTTGAATCCCCGTCTCTCAGACTATGGTTTGGCATCCTTCCACCAGCGTACAAGCCAAAATCTTGGGGCAGGATACAATGCACCAGAATGCACAAAACCATCAGCCTATACTTTGAAGAGTGATGTATACAGTTTTGGTGTAGTAATGCTGGAACTTTTGACAGGTCGAAAGCCTCTAGACAGTTCAAAGCCAAAAGCAGAACAATGTCTTGTTCGTTGGGCTACCCCACAACTTCATGACATAATTGCTGTGGAAAAAATGGTGGACCCTGCCTTGCGAGGACTTTACCCTCCTAAATCACTCTTTCGATTTGCTGATATCATCGCCCTTTGTGTTCAGTCTGAGCCCGAATTTCGGCCACCTGCGTCAGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAGTGTTCAAGTATGAAAATGAAAGAGGATCTTGGTGCATTTGGTCGGGGAGATGATTATGATGATTGA 2121 0.4144 MHHNHNVSSWLWIAFLIAVSTTTVHCKTSSQDVSALNVMYTSLNSPSKLSGWKSSGGDPCGDSWEGIKCSSSSVTEIKLSDLGLSGSVGYQLASLTSVTYFDLSNNNLKGDIPYQLPPNARDIDLSKNQFSGSIPYSISQMKELNSLNLAHNQLNNQLGDMFGSLTKLKQLDVSFNSLSGNLPQSLKSLRNLKKIHLQNNQFSGSLNVLANLPLDDVNVENNKLTGWVPEELKDISNLKTGGNSWSTGRAPPPPPGTPHIKHSKKKDGESEKSGKSVVIGVIIAGIVIVVLAIIIIVVSLSKRRSSARSLHLSEEERRSQHRSFTPLASQELSKDPFPYTTTENKGFNCNDSTSVDIKALQKSPSTSVRSSVSDCVQSFNDNEFAKRLNSRRSTSLRCNPFSLGELQIGTANFASGRLLGEGSIGRVYRAKYADGKVLAVKKINPSLFDDGPPEEFSKIVSSISKLRHPNIAELVGHCSEQEHMLVYDYFRNGSLHDFLHLSDDFSKPLTWNTRIRIALGTARAVEYLHEICSPPLVHKNIKSANILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRKPLDSSKPKAEQCLVRWATPQLHDIIAVEKMVDPALRGLYPPKSLFRFADIIALCVQSEPEFRPPASEVVQALVRLVQCSSMKMKEDLGAFGRGDDYDD 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03880 706 Gene3D Ribonuclease Inhibitor 26 260 IPR032675 -
Car06g03880 706 PANTHER OS01G0253100 PROTEIN 20 700 IPR045271 GO:0004714|GO:0006468
Car06g03880 706 SUPERFAMILY L domain-like 27 239 - -
Car06g03880 706 Pfam Protein tyrosine and serine/threonine kinase 416 680 IPR001245 GO:0004672|GO:0006468
Car06g03880 706 SUPERFAMILY Protein kinase-like (PK-like) 392 680 IPR011009 -
Car06g03880 706 MobiDBLite consensus disorder prediction 238 271 - -
Car06g03880 706 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 20 700 - -
Car06g03880 706 ProSiteProfiles Protein kinase domain profile. 413 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03880 706 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Car06g03880 706 Gene3D Transferase(Phosphotransferase) domain 1 490 698 - -
Car06g03880 706 Gene3D Phosphorylase Kinase; domain 1 373 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03880 Car-Chr6 70661619 70669808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03880 17 705 Strubbelig Receptor Gene Family AT1G78980 60.776 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Car06g03880 PK_Tyr_Ser-Thr 9.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03880 - - mtr:MTR_4g005130 1084.32