Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03871 ATGGATATTTTTAAACAAAAGAAGAAAAACACAGGGCGGAAGAAGATTGAGATCAAGAAGCTTGAGAAGAACACAAACAAGCAAGTGACATTCTCAAAAAGAAGATCAGGTTTATTCAAAAAAACAAGCGAACTTTGTGTTTTATGCAATGTTGATGCAGCTATCGTTGTGTTTTCCCCTGCTGATAAACTATTTTGCTTTGGTCAACCAAACACTGACGCTATTATCAATAGCTACATCAATGGAACAACCGAGTTTGAGACTTCAAAGTCAATAGGAAAATCTATTTCTTATGAAGAACATAATACAGAATATGAGAAAGCAATACAAAATTTGGAGTTTGAAAAGAAGAAGCTTGAAGAATATGAGAATTTAACCAAGGTTTGGAATTCAGGCGAATGGTGGAATGACCCAATTGATGAGATGAGTATTGATCAGCTTGAACAATTTATGGCCTCTATTTATGAGTTAAGGAGGAAGCTAGTTGATAGAGCTCATGAAGTTGTCATGATGCTCCCCATGTTAGTGTAG 531 0.354 MDIFKQKKKNTGRKKIEIKKLEKNTNKQVTFSKRRSGLFKKTSELCVLCNVDAAIVVFSPADKLFCFGQPNTDAIINSYINGTTEFETSKSIGKSISYEEHNTEYEKAIQNLEFEKKKLEEYENLTKVWNSGEWWNDPIDEMSIDQLEQFMASIYELRRKLVDRAHEVVMMLPMLV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03871 176 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Car06g03871 176 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Car06g03871 176 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Car06g03871 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Car06g03871 176 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Car06g03871 176 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Car06g03871 176 Gene3D - 24 127 IPR036879 GO:0003677|GO:0046983
Car06g03871 176 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 171 - -
Car06g03871 176 PANTHER MADS BOX PROTEIN 8 171 - -
Car06g03871 176 Coils Coil 98 125 - -
Car06g03871 176 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03871 Car-Chr6 70530866 70531396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03871 8 159 Type I MADS-box Gene Family AT5G60440 42.500 2.01e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car06g03871 SRF-TF 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03871 - - cam:101502875 307.76