Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03848 ATGAATGTGAATAGTTTATTCGATGCTGCTACTGAGAACAAGATGAGACAAGCTGGTGCATATTCAAAGTTACTATGTGGTGGCATATCAAGAAGAACAGGTCCACATTCATTACCCTTAGCAAGAATAAAGAAGATAATGAAGAAATCTAGTGAAGATGTGAAGATGATATCAGGTGTGGCACCAATTGTTTTTTCTAAGGCTTGTGAACTTTTCATTGAGGAACTTACAAGAAGGTCTTGGAATATTGCTATTGATGGTAAAAGAAGAACTTTGAATAAAGATGATGTTGCTTCTGCTGTTATAGCTACAGATTTATTTGACTTTTTGATTGATTTGGTTTCTAATTCTCATGCTAATTTAGTTGCTGGTGAATGTGTTGCCAGTAACACCAATGTCTTTGATTCTATATTTTAA 417 0.3405 MNVNSLFDAATENKMRQAGAYSKLLCGGISRRTGPHSLPLARIKKIMKKSSEDVKMISGVAPIVFSKACELFIEELTRRSWNIAIDGKRRTLNKDDVASAVIATDLFDFLIDLVSNSHANLVAGECVASNTNVFDSIF 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03848 138 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 15 120 - -
Car06g03848 138 SUPERFAMILY Histone-fold 28 110 IPR009072 GO:0046982
Car06g03848 138 Gene3D Histone, subunit A 3 116 IPR009072 GO:0046982
Car06g03848 138 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 15 120 - -
Car06g03848 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03848 Car-Chr6 70253243 70255881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03848 36 115 CCAAT-HAP5 Transcription Factor Family AT1G54830 66.250 3.32e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Car06g03848 CBFD_NFYB_HMF 1.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03848 - - cam:101503561 190.66