Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03827 ATGGAAGTTGTGGTGGCAAAAGCGTTGAAACCAAGCTTGCGGACAGAGTCTATTTTCCCGCAAACAATTTGCGAAGAGATTCTGTGTTTGAACGCTAACAACGTTGTTGTCGGCGAAGATTTCTCTGTCGACGATTTGCTTGACTTTTCCCACGGCGAATTCCAACACAGTTCCGTCGGAAAAGAAATTGATGATTACGAGGAAGAGGAAGACCAGGAAAAGGACAGCGTTACCTCAGGTTCCTCACATGACCGTACAGAAGACGACGGTATCTCCAATTCCACAGCGTTTTCCGGTTCCGCCGAGTCTGACTCCATTTTTGCCGCCGGATTGGAAGTTCCGACCGATGATGTTGCGGATTTGGAATGGGTGTCTCATTTTGTGGACGATTCTCTGCCGGAACTTTCTCTACTGTATCCAGTTCGGGCCCGGCccgaaccggaacctagaccgagcccaaccgaaACTCCTGTTCATCTCTCTTTAATCCGTAAAAAGCCCAGAACCAACAAGACCAGAAAGCCCAACTGTCATATTTGGTCCTTCAACCCCGTACTTTCCGCGACGAAGAAGCAGAGGAAAAAGGCAGAGGTCCAACCAGGTGGACCCCAGTTTCAGCGACGCTGTAGCCATTGCCAGGTGCAGAAAACTCCACAGTGGAGAACCGGTCCACTTGGACCCAAAACCCTATGTAACGCTTGCGGCGTCCGGTTTAAGTCCGGTCGGCTTTTCCCGGAGTATAGACCGGCTTCAAGTCCGACATTCTCTGGTGATATTCACTCGAACAGCCACCGTAAGGTTTTGGAGATGAGGCGGAGGAAGGAGACGGATGAGACTGCGTCTGGTTTGAACCGGGTTCAAATGGTCTAG 870 0.4862 MEVVVAKALKPSLRTESIFPQTICEEILCLNANNVVVGEDFSVDDLLDFSHGEFQHSSVGKEIDDYEEEEDQEKDSVTSGSSHDRTEDDGISNSTAFSGSAESDSIFAAGLEVPTDDVADLEWVSHFVDDSLPELSLLYPVRARPEPEPRPSPTETPVHLSLIRKKPRTNKTRKPNCHIWSFNPVLSATKKQRKKAEVQPGGPQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPASSPTFSGDIHSNSHRKVLEMRRRKETDETASGLNRVQMV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03827 289 ProSiteProfiles GATA-type zinc finger domain profile. 203 239 IPR000679 GO:0006355|GO:0043565
Car06g03827 289 Pfam GATA zinc finger 209 242 IPR000679 GO:0006355|GO:0043565
Car06g03827 289 ProSitePatterns GATA-type zinc finger domain. 209 234 IPR000679 GO:0006355|GO:0043565
Car06g03827 289 SMART GATA_3 203 253 IPR000679 GO:0006355|GO:0043565
Car06g03827 289 MobiDBLite consensus disorder prediction 58 98 - -
Car06g03827 289 MobiDBLite consensus disorder prediction 143 174 - -
Car06g03827 289 PANTHER GATA TRANSCRIPTION FACTOR 1 186 - -
Car06g03827 289 PANTHER GATA TRANSCRIPTION FACTOR 187 286 - -
Car06g03827 289 Gene3D - 204 254 IPR013088 GO:0006355|GO:0008270
Car06g03827 289 CDD ZnF_GATA 208 265 IPR000679 GO:0006355|GO:0043565
Car06g03827 289 PIRSF Txn_fac_GATA_plant 24 289 IPR016679 GO:0003677|GO:0005634|GO:0045893
Car06g03827 289 MobiDBLite consensus disorder prediction 75 90 - -
Car06g03827 289 PANTHER GATA TRANSCRIPTION FACTOR 187 286 - -
Car06g03827 289 PANTHER GATA TRANSCRIPTION FACTOR 1 186 - -
Car06g03827 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03827 Car-Chr6 69955612 69957145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03827 40 277 C2C2-Gata Transcription Factor Family AT4G36240 44.841 1.16e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car06g03827 GATA 3.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03827 - - gmx:100776188 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03827 06 69955612 69957145 Car06g03827 06 69955612 69957145 ECH