Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g03815 | ATGAAGATCCAGTGTGATGTATGCCGCAAGCAAGAGGCCTTGTTTTTCTGTCCTGCAGATGAAGCAGCTCTATGCAATCACTGTGATCACACTATTCATTATGCAAACAAGCTCGCTGCAAAACACAAACGCTTCTCTCTTCACCACCCTACATCTAAAGACACCCCTCTCTGTGATATATGCAATGAGAGGCGAGCATATCTATTTTGCAAAGATGACAGAGCAATACTTTGCAGAGAATGTGACATACCTATCCATAGAGTCAATGAACTTGCCAAGAAACACAATAGGTTTCTTCTCACAGGTGTAAAGCTTGGTGCTTCTTCTTCAGATGCAACAACTTCCAATGGCTCAGAAGTAAGAAACACACGTTCAGGACCAAGTTCATTTTCAAGTGAAAATGTCAGTTCTACTTGCACTTTCAAAGACAACATGGCTTGGGACACAGTTTCAACGAGTAGCATTTCTGAATACTTGATTGAAACAATTTCTGGTTACTGCATGGAAGACCTTTTTGATGCTTCTTATGCACCTAATGTTTTCTGA | 546 | 0.4084 | MKIQCDVCRKQEALFFCPADEAALCNHCDHTIHYANKLAAKHKRFSLHHPTSKDTPLCDICNERRAYLFCKDDRAILCRECDIPIHRVNELAKKHNRFLLTGVKLGASSSDATTSNGSEVRNTRSGPSSFSSENVSSTCTFKDNMAWDTVSTSSISEYLIETISGYCMEDLFDASYAPNVF | 181 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g03815 | 181 | MobiDBLite | consensus disorder prediction | 108 | 135 | - | - | |
| Car06g03815 | 181 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
| Car06g03815 | 181 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Car06g03815 | 181 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
| Car06g03815 | 181 | Pfam | B-box zinc finger | 56 | 96 | IPR000315 | GO:0008270 | |
| Car06g03815 | 181 | Gene3D | Classic Zinc Finger | 1 | 97 | - | - | |
| Car06g03815 | 181 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
| Car06g03815 | 181 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 180 | - | - | |
| Car06g03815 | 181 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Car06g03815 | 181 | PANTHER | B-BOX ZINC FINGER PROTEIN 20 | 1 | 180 | - | - | |
| Car06g03815 | 181 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car06g03815 | Car-Chr6 | 69818644 | 69819878 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car06g03815 | 1 | 181 | C2C2-CO-like Transcription Factor Family | AT4G39070 | 51.415 | 7.49e-57 | 177 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | DBB | Car06g03815 | zf-B_box | 2.4e-08 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g03815 | - | - | gmx:100790232 | 261.922 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car06g03815 | 06 | 69818644 | 69819878 | Car06g03815 | 06 | 69818644 | 69819878 | ECH |