Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03811 ATGGCTTCCGATTCTTCTCCCATGGATTTTAACAACGGTCCTTCATCCCCCGACGAACCACCATCAAGCCCAATCGCCAACACATTCTCAACTCCCGGCCAAAGACGCCGCCGCCGATCTACCACTCCATCGGCATTCGGAACTCCACCGACTCACCGATCTCGTTTAGCTTCCTCTGATGCCACTCCAACTCCTTCACGCCACCGCAGAAGAGGCGGCGGTGCTGCATCTGGCCGTCGTGTCCCCGCCACGCCGACTTCCACTTCCGAAGACATTCCAATGTCGTCGGAAGGTGGAGACGGTTACGACATGGACGATGCAGGTCCGACATTCGTCTGGGGGACCAACATAAGCGTGGAAGACGTGAACGATGCGATTCAGAGGTTTCTGAGACACTTTAGGGAACCTTCTACTTCGCAAGGTGATGTTGATGATTTGAATTTGGATGATGAAGGGAAGTATGAGAAATTGATTAAACATGTTATTGAGTTAGAAGGTGAATCTATTGATGTTGATGCTCGTGACGTGTTTGATCATGATCGTGATTTGTATACTAAGATGGTTAGGTACCCTCTTGAGGTGCTTGCCATTTTTGACATGGTTTTGATGAACATGGTTACCCGAATGAAACCCATGTTTGAGAAGCATGTTCAAACTAGGATTTTCAATCTCAAAAACTCAACTTCGATGAGAAATTTGAACCCTTCTGATATTGAGAGGATGATATCAATGAAGGGAATGATTATTCGATGTAGCTCAATTATACCAGAAATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGTTCAGACCCGGTTCCTGTGGAGAGAGGACGAATTGCTGAACCTACTGTATGCTTGAGGGAAGAGTGTCAGTCCAGGAATTCAATGACACTTGTTCACAACCGATGCAAGTTTACCGATAAACAAATTGTGAGGCTCCAGGAGACACCTGACGAGATACCTGAGGGAGGAACACCGCACACGGTTAGCTTGCTGTTGCATGACAAGCTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGAGCAATGAGTGTTAGAGTGGGACCAACTCAAAGAACTGTTAAGTCATTGTTCAAAACGTATATTGATTGTCTTCACATTAAAAAGACATCAAAGTCTCGGATGTTAGTTGAGGATGTTATGGAGGTTGAAAGTAGCCAGGGAAGACATGCAGAAGAGGTTCTATTTGGCGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCGAAACAACCTGATATATATGAAAGATTGACTAAGTCATTGGCGCCGAACATCTGGGAGCTAGATGATGTAAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGCAGTGCTTTGAAGTTGACATCAGGTGCCAGCTTCCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCGGGGACAAGCAAGTCGCAGCTACTTCAGTACATACACAAACTATCTCCACGTGGTATTTACACCAGTGGAAGGGGGAGCTCAGCTGTTGGATTGACTGCTTATGTGGCCAAAGATCCTGAAACAGGCGAAACTGTTCTTGAGAGTGGTGCCCTAGTTTTGAGCGATCGAGGTATCTGCTGCATAGATGAATTTGACAAAATGTCTGACAATGCACGGAGTATGTTACATGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGCATTATTGCTTCACTCAATGCCAGAACTTCTGTGTTGGCTTGTGCAAATCCTAGTGGATCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTATCCCGgtttgatttgatttacttaattCTAGACAAGGCTGATGAACAGACTGACAGACGACTTGCCAAACATATTGTATCCCTACACTTTAAGGATCATGAGAACATGGAGCAGGATGTGTTGGACATTTCTACACTAACTGATTATGTCAGCTATGCCCGAAAGCACATACATCCACAGCTGTCAGATGAAGCTGCTAGTGAACTGATCACGGGCTATGTTAAAATAAGGAGTAGAGGGAAATTTACTGGCAGTAGCAAAAAGGTGATAACAGCAACTCCGAGGCAGATTGAGAGTCTGATACGCCTTAGTGAAGCATTGGCTCGGATCCGTTTCTCTGAATGGGTCGAAAAGCATGATGTGATTGAGGCATTTCGACTTCTGGAAGTTGCAATGCAGCAGTCTGCAATGGATATCAAAACTGGAACTATAGACATGGATCTTATTAATACTGGAGTTTCGGCAAGCGAAAGGATGAGACGAGAAAGTTTGATTCAAGAAACTCGCAACATAATCATGGAGAAGATGCAAATCGGGGGACGATCTATGCGGTTATCGGAGTTATTGGAAGAATTGAAGAATCAGAGCCCTGGCAATGAAATTCATCTCAATGATTTAAGGAATGCAGTTGCTACTCTTGCCAGCGAAGGATTTGTTTCCATGATTGGTGACAGTGTAAAAAGAACGTGA 2520 0.4448 MASDSSPMDFNNGPSSPDEPPSSPIANTFSTPGQRRRRRSTTPSAFGTPPTHRSRLASSDATPTPSRHRRRGGGAASGRRVPATPTSTSEDIPMSSEGGDGYDMDDAGPTFVWGTNISVEDVNDAIQRFLRHFREPSTSQGDVDDLNLDDEGKYEKLIKHVIELEGESIDVDARDVFDHDRDLYTKMVRYPLEVLAIFDMVLMNMVTRMKPMFEKHVQTRIFNLKNSTSMRNLNPSDIERMISMKGMIIRCSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQSRNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDVMEVESSQGRHAEEVLFGEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGSALKLTSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFKDHENMEQDVLDISTLTDYVSYARKHIHPQLSDEAASELITGYVKIRSRGKFTGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKHDVIEAFRLLEVAMQQSAMDIKTGTIDMDLINTGVSASERMRRESLIQETRNIIMEKMQIGGRSMRLSELLEELKNQSPGNEIHLNDLRNAVATLASEGFVSMIGDSVKRT 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03811 839 Pfam MCM OB domain 230 359 IPR033762 -
Car06g03811 839 Pfam MCM P-loop domain 417 639 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 252 265 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 303 315 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 445 456 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 591 608 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 743 752 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Car06g03811 839 SMART AAA_5 471 621 IPR003593 -
Car06g03811 839 Pfam MCM N-terminal domain 125 227 IPR027925 -
Car06g03811 839 Gene3D - 230 369 IPR012340 -
Car06g03811 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 741 IPR027417 -
Car06g03811 839 Gene3D - 257 309 - -
Car06g03811 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 79 838 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Car06g03811 839 MobiDBLite consensus disorder prediction 1 102 - -
Car06g03811 839 CDD MCM4 432 741 - -
Car06g03811 839 SUPERFAMILY Nucleic acid-binding proteins 147 380 IPR012340 -
Car06g03811 839 MobiDBLite consensus disorder prediction 1 63 - -
Car06g03811 839 Pfam MCM AAA-lid domain 655 741 IPR041562 -
Car06g03811 839 Gene3D - 116 224 - -
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 470 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 530 544 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 558 571 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 582 594 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g03811 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 617 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g03811 839 ProSitePatterns MCM family signature. 538 546 IPR018525 GO:0003677|GO:0005524|GO:0006260
Car06g03811 839 SMART mcm 226 743 IPR031327 GO:0003677|GO:0005524|GO:0032508
Car06g03811 839 ProSiteProfiles MCM family domain profile. 429 635 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g03811 839 Gene3D - 749 831 IPR036388 -
Car06g03811 839 Gene3D - 413 748 IPR027417 -
Car06g03811 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 79 838 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03811 Car-Chr6 69782720 69787969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03811 1 838 Core DNA Replication Machinery Family AT2G16440 74.209 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03811 K02212 - gmx:100805788 1392.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03811 06 69782720 69787969 Car06g03811 06 69782720 69787969 ECH