Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03810 ATGGGAGAGATAGCGCGTGGAGGTTGTTGTCCTCCCATGGATCTGTTCCGTTCGGAGCCGATGCAACTCATTCAGCTTATCATTCCCATTGAATCCGCTCACCTCACTGTTTCCTACCTTGGTGACCTTGGCCTTCTTCAGTTTAAAGATCTCAATTCAGAGAAGAGCCCTTTTCAACGGACTTATGCAGCTCAGATAAAAAGATGTGGAGAGATGGCTCGTAAATTGCGTTTTTTCAAGGAGCAAATGTTTAAGGCAGGTGTTTCACCAAAATGTTCCACAACACAGTTTGATGCAAACACCGATGACCTTGAGATAAAACTTACAGAAATCGAGTCAGAGTTAACCGAGATGAACGCAAATGGTGAAAAGCTGCAACGCTCATACAATGAACTTCTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGCGATTTTTTCCACTCAGCTCAAAGCCGTGCGATAGAGCAGCAAAGAGAATATGAATCACGCCAACTGAGTGGGGAATCTATGGAAACACCTTTACTACAGGACCAAGAATTACCTGGCGATTCATCAAAGCCGGTTAAGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGAAAAGTCCATGGCATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAATGTATTTTTGAGACAAACTTCTGTTGAGGATCCAGTCACAGATCCTGTTTCTGGAGAAAAGACTGAGAAAAATGTTTTTGTCGTCTTCTACGCCGGTGAAAAAGTGAAAGCCAAGATTCTGAAAATCTGTGATGCCTTTGGTGCTAATCGATACCCATTTGCTGAGGAACTTGTGAAACAAGCTCAAATGATTTCGGAGGTTTCTGGAAAACTTTCAGAATTGAAGGCCACCATAGATGCTGGACTTTCACACCGAGTTAACTTGCTGGAAAACATTGGGACCCAATTCGAGCAATGGAATCTTTTGGCGAGGAAGGAGAAATCCATTTACCATACCCTGAACATGCTAAGCCTTGATGTGACGAAAAAATGTTTGGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAATAAAGCAGGTCCAAGATGCATTACATCGGGCTGCAATTGACTCTAATTCTCAAGTCAGTGCCATTTTGCAAGTTTTGCATACTAGGGAATTGCCACCTACCTACTTTCGCACTAACAAAGTTACTTCTTCGTTTCAAGGAATCATAGACTCATATGGGGTTGCTAAGTATCAAGAGGCAAATCCTACTGTGTTTACTGTAGTTACCTTTCCATTTCTTTTTGCCGTAATGTTTGGTGATTGGGGGCATGGAATATGTTTACTGCTGGCAGCTCTTTATTTCATAATCAGGGAGAAGAAACTTTCTAGCCAGAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGCTATGTTATTTTCTTGATGTCGCTCTTCTCAATCTACACTGGCCTGATCTATAATGAGTTCTTTTCTCTCCCATTTGAACTCTTTGGTCCCTCTGCATACGAATGTCGTGACCTTTCTTGCAGTGAAGCTACAACAATAGGGTTGATAAAAGTGCGCCGCACTTACCCATTTGGAGTGGATCCTGTATGGCATGGTAGCCGCAGTGAATTACCATTCCTGAACTCGTTGAAAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTAATGAGTTATTGCAATGCTAAATTCTTCAGGAACAACGTAAATGTATGGTTCCAATTTATCCCCCAGGTGATATTTCTCAACAGTCTATTCGGCTACCTAGCCCTACTTATTATTGTGAAGTGGTGTACGGGCTCTCAAGCTGATTTGTACCACGTAATGATTTATATGTTCCTGAGCCCAACAGATGATTTGGGTGAGAACCAACTCTTTGCGGGCCAGAAAAATCTTCAGCTCACGCTTTTGCTTCTGGCTGTTGTCGCTGTGCCCTGGATGCTGTTACCCAAACCCTTTATTTTAAAGAAGCAACATGAAGCTAGGCACGGAGATGAATCCTATGCACCACTTCCAAACACAGAGGAGAGCTTGCAAGTGGAGTCAAATCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAATTTTTGTACATCAACTCATACACACCATAGAATTTGTACTTGGAGCAGTATCTAATACAGCTTCTTACCTTCGTCTGTGGGCCCTTAGTCTTGCTCATTCAGAGTTATCAACGGTATTCTACGAGAAGGTTCTGCTTATGGCATGGGGGTACAATAATTGGATTATCCTGATAGTGGGTCTCATTGTTTTCATTTTTGCCACCGTTGGAGTATTGCTTGTCATGGAAACTCTGAGTGCCTTTTTGCACGCGTTGCGACTTCACTGGGTGGAGTATCAAAACAAGTTTTATGAGGGCGATGGTTACAAGTTTCATCCATTCTCGTTCACATTGCTAGACGAAGAGGAGGAGATACTTTAA 2466 0.427 MGEIARGGCCPPMDLFRSEPMQLIQLIIPIESAHLTVSYLGDLGLLQFKDLNSEKSPFQRTYAAQIKRCGEMARKLRFFKEQMFKAGVSPKCSTTQFDANTDDLEIKLTEIESELTEMNANGEKLQRSYNELLEYKLVLQKAGDFFHSAQSRAIEQQREYESRQLSGESMETPLLQDQELPGDSSKPVKLGFLAGLVPREKSMAFERILFRATRGNVFLRQTSVEDPVTDPVSGEKTEKNVFVVFYAGEKVKAKILKICDAFGANRYPFAEELVKQAQMISEVSGKLSELKATIDAGLSHRVNLLENIGTQFEQWNLLARKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFAIKQVQDALHRAAIDSNSQVSAILQVLHTRELPPTYFRTNKVTSSFQGIIDSYGVAKYQEANPTVFTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITEMTFGGRYVIFLMSLFSIYTGLIYNEFFSLPFELFGPSAYECRDLSCSEATTIGLIKVRRTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIVMSYCNAKFFRNNVNVWFQFIPQVIFLNSLFGYLALLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFAGQKNLQLTLLLLAVVAVPWMLLPKPFILKKQHEARHGDESYAPLPNTEESLQVESNHDSHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLMAWGYNNWIILIVGLIVFIFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYKFHPFSFTLLDEEEEIL 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03810 821 Pfam V-type ATPase 116kDa subunit family 39 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car06g03810 821 PANTHER VACUOLAR PROTON ATPASES 5 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car06g03810 821 PIRSF ATP6V0A1 11 820 IPR026028 GO:0000220|GO:0046961
Car06g03810 821 Coils Coil 101 128 - -
Car06g03810 821 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 5 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03810 Car-Chr6 69758180 69771633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03810 13 819 Primary Pumps ATPases(2) AT2G21410 77.970 0.0 1309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03810 K02154 - gmx:100810062 1438.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03810 06 69758180 69771633 Car06g03810 06 69758180 69771633 ECH