Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03775 ATGGCGTCCGCAGATGTTGAGTACCGTTGCTTCGTTGGTGGACTTGCATGGGCCACCGATAGCGATGCCCTTGAGAAAGCCTTCTCTCAATACGGAGAGATCGTCGATTCGAAGATTATTAACGATCGTGAGACTGGAAGGTCAAGAGGGTTTGGATTCGTGACATTTGCTAATGAGAAGTCAATGAGGGATGCTATTGAAGGAATGAACGGACAGGACATGGACGGACGTAACATTACTGTTAACGAAGCTCAAAACCGTTCAAgtggcggtggaggaggtggttacggtggaggtcgtcgtgaaggtggatacaaccgaagcagtggtggtggtggaggctatggtggtggaggtggttatggtggtggtagggaccgtggatacggtggcggaggtggtgatggtggttcccgttactcacgtggcagcggcggtggcggtggtggtggAAACTGGAGAGAGTAG 468 0.2821 MASADVEYRCFVGGLAWATDSDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMRDAIEGMNGQDMDGRNITVNEAQNRSSGGGGGGYGGGRREGGYNRSSGGGGGYGGGGGYGGGRDRGYGGGGGDGGSRYSRGSGGGGGGGNWRE 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03775 155 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Car06g03775 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Car06g03775 155 MobiDBLite consensus disorder prediction 75 89 - -
Car06g03775 155 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 154 - -
Car06g03775 155 SMART rrm1_1 9 82 IPR000504 GO:0003723
Car06g03775 155 Gene3D - 2 122 IPR012677 -
Car06g03775 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Car06g03775 155 MobiDBLite consensus disorder prediction 68 155 - -
Car06g03775 155 PANTHER GEO13361P1-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03775 Car-Chr6 69418464 69420714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03775 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 39.241 9.62e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03775 - K13195 ccaj:109800369 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03775 06 69418464 69420714 Car06g03775 06 69418464 69420714 ECH