Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03774 ATGGCCTCTTCCGCTGTTGAGTACCGTTGTTTCGTTGGTGGTCTAGCCGGTCCCCCCGACAGCGACGCCCTAGCCAAAGCCTTCTCTTCCTACGGCGAAGTTACTGATTCCAAGGTTATTAACGACCGTGAGACTGGAAGGTCAAGGGGTTTTGGATTTGTGACGTTTTCAACTGAGCAATCCATGAGAGACGCAATTGAAGGGATGAACGGTCAAGATGTTGACGGACGTAACATTACCGTGAACGAAGCTCAGTCTCGTGGTAGCGGTGGTGGAGGCGGCCGTGGTGGCGGTGGATATGGTGGAGGCGGTGGATATGGTGGTGGACGTCGTGAAGGTGGATATAACAGAGGTGGCGGTGGAGGATATGGTGGTGGAGGTGGATATGGCGGAGGAGGTGGTGGTGGTTATGGTGGTAGCAGAGATCGTGGATATGGTGGTGGTGATGGTGGTTCTCGCTACTCACGTGGCGGTGAAGGTGGTGGAAACTGGAGGGACTAG 501 0.5489 MASSAVEYRCFVGGLAGPPDSDALAKAFSSYGEVTDSKVINDRETGRSRGFGFVTFSTEQSMRDAIEGMNGQDVDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGYGGGRREGGYNRGGGGGYGGGGGYGGGGGGGYGGSRDRGYGGGDGGSRYSRGGEGGGNWRD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03774 166 Gene3D - 2 106 IPR012677 -
Car06g03774 166 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 165 - -
Car06g03774 166 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Car06g03774 166 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Car06g03774 166 SMART rrm1_1 9 82 IPR000504 GO:0003723
Car06g03774 166 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Car06g03774 166 MobiDBLite consensus disorder prediction 69 166 - -
Car06g03774 166 PANTHER GEO13361P1-RELATED 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03774 Car-Chr6 69410803 69411969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03774 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 41.667 5.64e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03774 - K13195 ccaj:109800369 142.51