Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03744 ATGGACGATTACGCCAGCAGCGACGATGATTACAATTACTCCGATGATCAAGACTCTGTCGGTGATGTCTTCGCAAACGATGACCTAGATTTTCCGTTGGTCTCTTCCAAGGGTTCCACTACTCAGGTGATTACGAAGGAATCACTGCTAGCTGCACAGAGGGAGGACTTGCGGAGAGTGATGGACATGCTTTCTGTAAGAGAACAACACGCACGTACACTGCTTATTTATCATCGTTGGGATGTGGACCGTTTGTTTGGAGTTTATGTAGAAAAAGGGAAGGCATTTCTGTTTGCTGAGGCTGGTGTTAGTGTGGATGAATGTCGTGACTCTAGCTCACTGGCTTATGATTCAGTAATGTGCGAAATCTGCATGGATGACGTTCCTATTGAAGAAGCAACAAGAATGGATTGTGGTCACTGCTTTTGCAACTCATGTTGGACGGAACATTTTTTTGTCAAGATAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCACAAATGTAATTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAGAAAGTACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCGTACATCGAAGACAATAAAAGAGTTAAATGGTGTCCGAGTACGCCGCATTGTGGGAATGCAATTCGTGTGGAGGAGGATGACTTGTGTGAGGTAGAGTGTTCATGTGGTGAACAGTTTTGTTTTAATTGCTTGGAAGAAGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGGTTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCAGTGGAGAAGAATGGTGGCTGTAATTTGGTTAGCTGTATTTGCGGCCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGTCGGGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAACAGGAGAAAACAGCTGAGCGGGCAAAGAGGGATCTCTATAGGTACATGCATTATCATAACCGGTATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGAGGCCATACAAGGGAAAATTTCGATTTCGGAAGAAAAAAATTCTACTACAGTCACAGATTATAGCTGGGTAAACAATGGACTCTCTAGACTTTTCAGATCAAGGCGTGTCCTTTCCTACTCATATGCATTTGCATTTTACATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGTCAGAAGATCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGGAAATGTTGAAAGACTCTCTAAGGTTTTGGAGGAGCCTTTTGAAACCTTTAAAGATAAAAAGGTTATGGAAATAAGGATGCAGATACTAAATCTGTCTACGCTAATTGACAATCTTTGCAAAACAATGTATGAGTGCATCGAGAATGATTTACTGGGTTCTCTTAATCATGGTATTCACAGTATAGCACCATATAAGTCAAGGGGCATAGAGAAGGCTTCAGAGCTTCAAGTTTCTTGGAGCAATAAAGCCAATAATACCGTTTGA 1605 0.415 MDDYASSDDDYNYSDDQDSVGDVFANDDLDFPLVSSKGSTTQVITKESLLAAQREDLRRVMDMLSVREQHARTLLIYHRWDVDRLFGVYVEKGKAFLFAEAGVSVDECRDSSSLAYDSVMCEICMDDVPIEEATRMDCGHCFCNSCWTEHFFVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSRKYPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEEDDLCEVECSCGEQFCFNCLEEAHSPCSCLMWELWVKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKEAIQGKISISEEKNSTTVTDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMSEDQREIKQNLFEDQQQQLEGNVERLSKVLEEPFETFKDKKVMEIRMQILNLSTLIDNLCKTMYECIENDLLGSLNHGIHSIAPYKSRGIEKASELQVSWSNKANNTV 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03744 534 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Car06g03744 534 SUPERFAMILY RING/U-box 192 260 - -
Car06g03744 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 206 IPR013083 -
Car06g03744 534 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 504 IPR031127 GO:0004842|GO:0016567
Car06g03744 534 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 -
Car06g03744 534 Gene3D - 250 498 - -
Car06g03744 534 Pfam Ariadne domain 331 532 IPR045840 -
Car06g03744 534 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 504 - -
Car06g03744 534 SMART ibrneu5 192 254 IPR002867 -
Car06g03744 534 SMART ibrneu5 262 327 IPR002867 -
Car06g03744 534 CDD RING-HC_RBR_TRIAD1_like 121 170 - -
Car06g03744 534 SUPERFAMILY RING/U-box 118 204 - -
Car06g03744 534 SUPERFAMILY RING/U-box 262 319 - -
Car06g03744 534 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03744 Car-Chr6 69059557 69064538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03744 61 529 ARIADNE family AT2G16090 71.036 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03744 K11968 - gmx:100783343 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03744 06 69059557 69064538 Car06g03744 06 69059557 69064538 ECH