Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03717 ATGCCTTGTCCTTCATTTCACAAGCTTGTTCTACCCTCTACTCTACAAGCTAAGCAACTGAGGCTTCCAGATAATTTTATGAGAAAATATGGGGGCCAGATTTCTCCAATCGTTACTCTCACAGTTCCTGATGGCAGTGTATGGCGTGTAGGATTAAAAAAGTCAGACAACAAATTTTGGTTCCGTGATGGTTGGAATGAATTTGTTCATCGCTATTCCATCAGTACTGGATACTTGTTACTTTTTAGATACGAAGGAAAGTCGTCTTTCAATGTTAATATTTTCAGTTTGGCTACTTCTGAGATTAACTATCAATCATCGACCGCACAAAGCAGTAAGGAAGGGCCTTACTATGCAAAATGTCTTAAGATTTTCGAAGAATTGGAAGACGAAGATTCCATTGAATTACTGGATTCGATGCCTTCAAAACTTACTCCTGGCCCATTGCAAAACAAAGCTTTTTCTGGATCAGCTGATAAATTCACACCCGGCAAGTCTCATTCGCCTCCAGCCCTACAGAATCTGTTCAATGCATCTAAACTTAATAGCATAAACTGGGGAGACGGTGGGAATACTCTTTCTTCCAGAAGCGCCAATTCGGTAGACAACCATTTGACCAGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTCTACCGAAGAAGTGAAGCTGCGAGCGGCTATCGATGAAAAGGTTAAAAAATCTGCTACAAAGAAGCGGAAATCAGATGTCCAGGAACCTTCTTCTGATCATGAAGACGAGGTAGAAATGCGTAATAGATTTTACGAAAGTGCATCTGCAAGGAAAAGAACCGTGACAGCTGAAGAACGAGAAAAAGCGATTAATGCAGCAAAAGAGTTTGAACCAACTAATCCTTTCTGCCGCGTTGTCCTGCGGCCCTCCTATTTATATAGAGGATGCATAATGTATCTTCCATCCTGTTTTGCAGAGAAGCATTTGAACGGCGTTTCAGGATTTATCAAACTTCAAATCTCGGATGGGAGGCAGTGGCCGGTTCGCTGCCTTTATAGAGGGGGTAGAGCTAAGTTAAGCCAGGGATGGTTTGAATTCTCATTAGAGAATAATTTAGGGGAAGGCGATGTCTGTGTGTTTGAGCTGCTCGGAACGAAGGATGTAGTGCTGCAAGTTACTGTTTTTCGTATTACTGGGGATGAAGGACCGTTGAGCCCGCCGCCTTTGCAGCAAAACCAACATGTGAGGCCAGCTAAACTGTTAACCAGTCCCTTTCAGCATCACCTCACTTCAACTAAACTGCATGGAAATTAA 1296 0.4228 MPCPSFHKLVLPSTLQAKQLRLPDNFMRKYGGQISPIVTLTVPDGSVWRVGLKKSDNKFWFRDGWNEFVHRYSISTGYLLLFRYEGKSSFNVNIFSLATSEINYQSSTAQSSKEGPYYAKCLKIFEELEDEDSIELLDSMPSKLTPGPLQNKAFSGSADKFTPGKSHSPPALQNLFNASKLNSINWGDGGNTLSSRSANSVDNHLTRDIGLQFNVVEFKKSTEEVKLRAAIDEKVKKSATKKRKSDVQEPSSDHEDEVEMRNRFYESASARKRTVTAEEREKAINAAKEFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLGTKDVVLQVTVFRITGDEGPLSPPPLQQNQHVRPAKLLTSPFQHHLTSTKLHGN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03717 431 Gene3D - 274 392 IPR015300 -
Car06g03717 431 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 421 - -
Car06g03717 431 Gene3D - 2 98 IPR015300 -
Car06g03717 431 Pfam B3 DNA binding domain 300 390 IPR003340 GO:0003677
Car06g03717 431 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Car06g03717 431 SUPERFAMILY DNA-binding pseudobarrel domain 290 391 IPR015300 -
Car06g03717 431 SMART B3_2 297 392 IPR003340 GO:0003677
Car06g03717 431 SMART B3_2 6 98 IPR003340 GO:0003677
Car06g03717 431 MobiDBLite consensus disorder prediction 237 259 - -
Car06g03717 431 CDD B3_DNA 295 390 IPR003340 GO:0003677
Car06g03717 431 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Car06g03717 431 CDD B3_DNA 4 96 IPR003340 GO:0003677
Car06g03717 431 ProSiteProfiles B3 DNA-binding domain profile. 297 392 IPR003340 GO:0003677
Car06g03717 431 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Car06g03717 431 PANTHER B3 DOMAIN-CONTAINING 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03717 Car-Chr6 68864296 68867673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03717 1 398 B3 DNA Binding Superfamily AT3G18990 51.232 3.95e-132 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car06g03717 B3 1.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03717 - - gmx:100813285 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03717 06 68864296 68867673 Car06g03717 06 68864296 68867673 ECH