Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03700 ATGCCGCTTCCGACGAAACCAACGAGGCCACCACACGAAATCGGCAGGGACTCCGAGGAGTCATCGACCCCTTCCAACAACCTATGGGTTGGAAATCTATCGCCGGACGTAACGGATTCCGATCTGATGAATTTATTCGCTCAATACGGCGCTCTCGACAGCGTCACCTCTTATTCCGCTCGCAGTTACGCTTTCGTTTTCTTCAAACGCGTTGAAGATGCTAAAGCCGCTAAAAACGCTCTCCAAGCCTTCTCTTTTCGCGGCAATTCCTTGAAAATTGAGTTTGCCAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGACTTTCGTAAATTTGGTAAAATTGAGGATTACAAGTTCTTTAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGACGATGCTACCCAGGCAATGAAAATTATGAATGGAAAACGCATTGGTGGGGAAAATATTCGTGTTGACTTCCTCCGGTCAAATGCTACAAAAAAAGATCAATTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTACTGATTCCTATTCTGGGCAGAAAAGACCACTGAATTCACAAACTCTATTGGGGAGGAAGGGTGATGGTCAGCCCAGTAACGTTTTGTGGATCGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTCCACAATGCTATGATTCTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGCATTATTCATTTGTTGAATTTCGAAGTGTTGATGAAGCCCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTCAATGATTCTCGCATAACAATTAATTATTCAAGCGGTGACATGGGACATGGCAAAGATTACCCTGGCTTTTATACTGGAAGTAATGGGCCAAGACCTGATTTATTCCTAAATGAGAATCCATATCGACCATTACAGATGGATTTATTCGGTCATAATCGTCCTGTGGTTCCAAATAATTTTCCTGGACAGCTGCCTACTGGCAGTATTGTTGGTCCAAACATGCCAATGCGGCCGTTTGGTCCTCAAGGTGGTCCTGAATCTGTTGTTTCTGGCCCTGACTTTAACGAGATCAATACACTACACAAATTTCAGGATGGTAGCTTGACGAATAAGATGGGTCCAAACTGGAAAAGGCCATCTCCGCCTGCACCAGGATTGCTTTCTTCTCCTGCTCCAGGTGTTAGGCTTCCTGCAAGATCAGCCTCTGGTGCTTGGGATGTACTTGACGTAAACCATATTCCAAGAGATTCTAAACGGTCTAGGATGGATGGTGCATCACCTAATGATGATGCTCCATTTCCTTTAAGAAATAAAGATGATCGTAGAAATAAAGATGATCGTAGGTTAGCTCCCGAACAAACATATGGGATGGGTCCAGCTATTGATGGAGGTGGTTCTGGTCCATATCATGGAAGGGGTATACTTGGTCCAGGAAGCACAAGGATTCCAGCCGGAGTACATGCTTCTGTCCAACCCGATGATATTGATCATATATGGCGCGGGCTTATTGCAAAAGGAGGAACACCTGTTTGTCGTGCTAGATGCATCCCTGTAGGAAAAGGGATTGGAACAGAGCTCCCTGAAGTTGTTGATTGCTCAGCTAGGACAGGATTGGATATACTTGCAAAACACTACGCAGATGCAATTGGCTTTGACATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTGCTTCATACACAGAATTTCTACGCTACCTTGGTGCAAAAAACCGTGCTGGTGTTGCCAAGTTTATTGACAATACAACTTTATTCTTGGTACCTCCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCACTGGACCTGAACGTTTATATGGTGTGGTTCTCAAGTTTCCACCAGTGCCTAGTGGTGCGCCCATGCACCAATCACCGCATTTGCCCATGCCTTCAACTCAATATATGCAGCAGATTCCTCCTTCACAGGCCGAATATGATATGAATCCTGCTAAGGAGGAACAGGTTTTGCCCATGGATTACAACAGAATGTTGCACGAGGATTCTAAGCTTCCATCTAAACAAGTATATCCACAACCAGGTGGGCCTCCTTCAGTTCAGTCTGCAGCTCCAGATTATGCTCCTAATGCTGCTTCTGGGTCTCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCGACTTTAGCTTCTTTTCTTCCTACAAATGTTCAATCATCTGCTACTGATGGTGCCAAGCCAGCTGTAGGCTCCTCAAATTCGAAGCCTCCGTTTCCTCCTGTGGCATCTAATGATGGAAACCAATCTCAATTGTGGAAACAGGATCATCAAATTGCAGATCAATCCATTCATCCACCTCAGCAGTTGAGGAGTATGTATAACATTCACAATGCTCATTATCAGCCTTATCCACCAGCATCAGCTCCTGGCCACACTTCTCAAGTGTTCTCTGGCAGTTCTCATATTCAAGACAATGTTGTTAGCCAGCAACAGCAAGGTGTGAATTCATCTAGACACATGCCTAATTTCGTGACACCTACTCAAAGTGGACAGGTAGCTGCGTCCTCCCATTTCAGTCATCAGTATCAGGTCGAAGTTCCTTCCAATACTCAAAAAGGCTTTGGTGTGGTGCCAGGAAGTGACCCCTCTGCTTTATACAACTCCCAGTCTTTCCAGCAACCTAATAATAACTCCCAGTCTTTCCAGCAACCTAGTAATAACTCTCAGCCTTTCCAGCAACCTAGTAATAACTCTCAGCCTTTCCAGCAACCTAATAATCCTCAGCATCAACCTGTCATACCATATACAGCGGACCAAATGAACTCCAATCCTCCCATTCAGCAGCATCCTGCCTATGGAATTGGTCAAGGAAACCCAGAAATGGAGGCTGATAAGAACCAGCGGTACCAGTCAACTTTACAGTTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAAACTCAAGGAGGACATGGGCCAGGAATTCAACAATGA 3045 0.4466 MPLPTKPTRPPHEIGRDSEESSTPSNNLWVGNLSPDVTDSDLMNLFAQYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQAFSFRGNSLKIEFARPAKPCKQLWVGGISPAVTKEDLEADFRKFGKIEDYKFFRDRNTACVEFFNLDDATQAMKIMNGKRIGGENIRVDFLRSNATKKDQLLDYGQFQGKSLGPTDSYSGQKRPLNSQTLLGRKGDGQPSNVLWIGYPPNVQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDSRITINYSSGDMGHGKDYPGFYTGSNGPRPDLFLNENPYRPLQMDLFGHNRPVVPNNFPGQLPTGSIVGPNMPMRPFGPQGGPESVVSGPDFNEINTLHKFQDGSLTNKMGPNWKRPSPPAPGLLSSPAPGVRLPARSASGAWDVLDVNHIPRDSKRSRMDGASPNDDAPFPLRNKDDRRNKDDRRLAPEQTYGMGPAIDGGGSGPYHGRGILGPGSTRIPAGVHASVQPDDIDHIWRGLIAKGGTPVCRARCIPVGKGIGTELPEVVDCSARTGLDILAKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFIDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPSGAPMHQSPHLPMPSTQYMQQIPPSQAEYDMNPAKEEQVLPMDYNRMLHEDSKLPSKQVYPQPGGPPSVQSAAPDYAPNAASGSQAGVALTPELIATLASFLPTNVQSSATDGAKPAVGSSNSKPPFPPVASNDGNQSQLWKQDHQIADQSIHPPQQLRSMYNIHNAHYQPYPPASAPGHTSQVFSGSSHIQDNVVSQQQQGVNSSRHMPNFVTPTQSGQVAASSHFSHQYQVEVPSNTQKGFGVVPGSDPSALYNSQSFQQPNNNSQSFQQPSNNSQPFQQPSNNSQPFQQPNNPQHQPVIPYTADQMNSNPPIQQHPAYGIGQGNPEMEADKNQRYQSTLQFAANLLLQIQQQQTQGGHGPGIQQ 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03700 1014 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Car06g03700 1014 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Car06g03700 1014 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Car06g03700 1014 MobiDBLite consensus disorder prediction 440 487 - -
Car06g03700 1014 MobiDBLite consensus disorder prediction 886 965 - -
Car06g03700 1014 MobiDBLite consensus disorder prediction 816 872 - -
Car06g03700 1014 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Car06g03700 1014 MobiDBLite consensus disorder prediction 1 28 - -
Car06g03700 1014 MobiDBLite consensus disorder prediction 702 731 - -
Car06g03700 1014 CDD RRM3_Spen 28 97 - -
Car06g03700 1014 Gene3D - 11 100 IPR012677 -
Car06g03700 1014 Gene3D - 101 182 IPR012677 -
Car06g03700 1014 SUPERFAMILY RNA-binding domain, RBD 101 190 IPR035979 GO:0003676
Car06g03700 1014 SUPERFAMILY RNA-binding domain, RBD 18 100 IPR035979 GO:0003676
Car06g03700 1014 MobiDBLite consensus disorder prediction 389 419 - -
Car06g03700 1014 MobiDBLite consensus disorder prediction 457 475 - -
Car06g03700 1014 MobiDBLite consensus disorder prediction 886 982 - -
Car06g03700 1014 SUPERFAMILY RNA-binding domain, RBD 218 299 IPR035979 GO:0003676
Car06g03700 1014 MobiDBLite consensus disorder prediction 756 792 - -
Car06g03700 1014 Pfam SPOC domain 517 634 IPR012921 -
Car06g03700 1014 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Car06g03700 1014 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Car06g03700 1014 Gene3D - 214 300 IPR012677 -
Car06g03700 1014 CDD RRM3_Spen 105 174 - -
Car06g03700 1014 PANTHER RNA RECOGNITION MOTIF-CONTAINING 3 1013 - -
Car06g03700 1014 CDD RRM3_Spen 225 294 - -
Car06g03700 1014 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 3 1013 - -
Car06g03700 1014 MobiDBLite consensus disorder prediction 823 872 - -
Car06g03700 1014 MobiDBLite consensus disorder prediction 194 216 - -
Car06g03700 1014 MobiDBLite consensus disorder prediction 772 792 - -
Car06g03700 1014 SMART rrm1_1 104 171 IPR000504 GO:0003723
Car06g03700 1014 SMART rrm1_1 224 292 IPR000504 GO:0003723
Car06g03700 1014 SMART rrm1_1 27 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03700 Car-Chr6 68722904 68733662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03700 25 286 Eukaryotic Initiation Factors Gene Family AT4G34110 22.300 1.64e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03700 - - mtr:MTR_4g068120 1511.51