Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03679 ATGGGAAGTTGCGTATCAACGCAAGGAAAAAATGGGGGACGCAAGAGATCAAGGGATCATAACATTAACAACAAACAGCATAAAACAAACGATCCACACCACGAAGTTTCAACACCGACGGCGCGTAGGTCAAGCGTGTCGACGACGCGTCCACTAAACGTGGTGACGAATCCAAGTCCGGGAAACATATTCGACAAGTACGAATTGGGGAAAGAGCTAGGGAGAGGGGAATTCGGTGTGACGCACCGTTGCGTGGAGATTAAAACGGGTGAGGCATTTGCTTGTAAGAAGATAGCGAAAACGAAATTGAGAACGGAGATTGATATTCAAGATGTGAGGAGAGAGGTTCAGATAATGAGGCATTTACCAAAGCACCCTAACATTGTTTCTTTTAGAGAAGCTTATGAAGATAGAGATGCTGTTTATCTTGTTATGGAACTTTGTGAAGGTGGTGAACTTTTTGATAGGATTGTTGCTAAAGGTCATTATACAGAAAGAGCTGCTGCTAATGTTGCCAAAACCATTCTTGAAGTTTGCAAGGTGTGCCATGATCATGGTGTGATTCATAGGGACTTAAAACCTGAAAATTTTTTATTTGCAGATGGAACTGAGGGAGCTTCACTAAAATCGATTGATTTTGGCCTTTCCACTTTCTATAATCCTGGGTCAGGCGAAAAATTCAATGAAATTGTTGGAAGTCCCTATTACATGGCTCCTGAGGTTTTAAGACGTAACTATTCACAAGAAATTGATATATGGAGCACAGGTGTTATTCTTTATATTTTACTTTGTGGAGTTCCACCTTTTTGGGCAGAAACTGAAGAAGCCATAGCACAGGCGATAATCCGGGGTAATGTTGATTTCACAAGAGACCCTTGGCCTAAAGTTTCAGAAGAAGCAAAATACCTTGTTAAGCGTATGCTTGATCCAGATCCAGACACCAGAATCAAAGTTCAAGAGGCTCTTGATCATTCCTGGATACAACATAGGGAGCATGGTAGAAATGTTTCTCTTGGAGACCAAGTGAGAATGAGAATCAAGCAATTCTCCTTGATGAACAGATTCAAAAAGAAAGTCCTTAGAGTTGTGGCTGATAACTTGCCAGATGAACAAATTGATGGGCTTAGACAAATGTTTGATATGATGGACAAGGACAAAAATGGACACTTAACATTTGAAGAGCTCAAAGATGGTTTTTCAATGATTGGACATGTTATTCCTGATCCTGATGTCAGGATGTTAATAGATGCTGCAGACTTTGACGGAAATGGCACCTTGAATTGTGAAGAGTTCATCACGATGAGTGTTCATTTGAGAAGAATTGGAAATGATGAGCATCTCTCTGAAGCTTTCAATTTCTTTGACAAGAATCAGAGTGGATACGTTGAGTTTGAGGAGTTGAAAGACGCATTATCGGACGATGACTCAACCGACGACCAGGTGATCAGAGACATTCTAAATGACGTCGACTTGGATAAGGATGGTCGAATAAGTTTTGAGGAATTTAAGGCAATGATGAAGTCAGGAGGAGATTGGAAAATGGCATCTCGACAATATTCAAGAGCATTATTAAATGCATTAAGCTTCAGAATGTTTAAAGACAAATCTGCTGGAGTAGTAACTACTAACTAA 1632 0.4032 MGSCVSTQGKNGGRKRSRDHNINNKQHKTNDPHHEVSTPTARRSSVSTTRPLNVVTNPSPGNIFDKYELGKELGRGEFGVTHRCVEIKTGEAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPKHPNIVSFREAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHDHGVIHRDLKPENFLFADGTEGASLKSIDFGLSTFYNPGSGEKFNEIVGSPYYMAPEVLRRNYSQEIDIWSTGVILYILLCGVPPFWAETEEAIAQAIIRGNVDFTRDPWPKVSEEAKYLVKRMLDPDPDTRIKVQEALDHSWIQHREHGRNVSLGDQVRMRIKQFSLMNRFKKKVLRVVADNLPDEQIDGLRQMFDMMDKDKNGHLTFEELKDGFSMIGHVIPDPDVRMLIDAADFDGNGTLNCEEFITMSVHLRRIGNDEHLSEAFNFFDKNQSGYVEFEELKDALSDDDSTDDQVIRDILNDVDLDKDGRISFEEFKAMMKSGGDWKMASRQYSRALLNALSFRMFKDKSAGVVTTN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03679 543 SMART serkin_6 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03679 543 MobiDBLite consensus disorder prediction 1 57 - -
Car06g03679 543 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Car06g03679 543 Pfam EF-hand domain pair 445 507 IPR002048 GO:0005509
Car06g03679 543 Pfam EF-hand domain pair 375 434 IPR002048 GO:0005509
Car06g03679 543 SMART efh_1 410 438 IPR002048 GO:0005509
Car06g03679 543 SMART efh_1 446 474 IPR002048 GO:0005509
Car06g03679 543 SMART efh_1 374 402 IPR002048 GO:0005509
Car06g03679 543 SMART efh_1 481 509 IPR002048 GO:0005509
Car06g03679 543 SUPERFAMILY Protein kinase-like (PK-like) 63 328 IPR011009 -
Car06g03679 543 Gene3D Phosphorylase Kinase; domain 1 69 152 - -
Car06g03679 543 Pfam Protein kinase domain 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03679 543 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Car06g03679 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Car06g03679 543 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Car06g03679 543 MobiDBLite consensus disorder prediction 12 38 - -
Car06g03679 543 Gene3D Transferase(Phosphotransferase) domain 1 153 335 - -
Car06g03679 543 SUPERFAMILY EF-hand 366 506 IPR011992 -
Car06g03679 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 46 522 - -
Car06g03679 543 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Car06g03679 543 MobiDBLite consensus disorder prediction 39 57 - -
Car06g03679 543 CDD STKc_CAMK 66 326 - -
Car06g03679 543 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Car06g03679 543 ProSiteProfiles EF-hand calcium-binding domain profile. 442 476 IPR002048 GO:0005509
Car06g03679 543 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 46 522 - -
Car06g03679 543 CDD EFh 446 507 IPR002048 GO:0005509
Car06g03679 543 Gene3D - 336 509 - -
Car06g03679 543 ProSitePatterns EF-hand calcium-binding domain. 419 431 IPR018247 -
Car06g03679 543 ProSiteProfiles Protein kinase domain profile. 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03679 Car-Chr6 68535677 68539291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03679 1 534 EF-hand Containing Proteins AT2G31500 68.022 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Car06g03679 Pkinase 1.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03679 K13412 - gmx:100818929 867.07