Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03678 ATGGACTCCGAGGATGATATGCACGATGCTAACGACGTGGAGTCCCTTGAAGACGATGACGATTTCTACAGTGGTGACACGGAGGATGCTTCCATGGATTATTACAGCGATTACGATGACGATGCCGGTGATTACTTCGATGATGCTGATAAGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACCATCTTGAAGGAATCCGATATCCGAGTAAGACAGGAAGATGACATCACTAGAGTAGCAGCTGTTCTTTCTCTATCAAGAGTTTTTGCAAGTATACTACTTCGTCACTACAATTGGAGCGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCGAGTTCGAAAAGCAGTTGGCTTGTTGGAAAAGCCAGTTGTACAGTCTCCTAATGCTAGAGAGCTTACATGTGGCATCTGTTTTGAAAACCATCCTCGTTCTGTGATTGAAATGGCTTCTTGTGGTCATCCATATTGTTTCACATGCTGGGAAGGATATATCAGTACATCCATTAATGACGGTCCTGGATGTTTGATGTTGAGATGTCCTGAACCCACTTGTGGTTCTGCTATTGGTCAAGATATGATTAATCTATTAGCATCTGAGGAAGATAAACAAAAGTATGCCCGTTATCTTCTTAGATCTTATATTGAAGATAATAAAAAGTCAAAGTGGTGTCCTGCTCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGGAAACTATGATGTCTCTTGCCTCTGCTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTTTGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCCAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATCACATGCACTCCACCCTGTAAATTTGAATTCTGCTGGCTATGCCTTGGTGCTTGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACCGAGAGAAGAAGAGAAATGGCGAAGAATTCATTAGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTACATCAAATGCAAACAGTTCATATTGAGAAGCTCAGTGATACCCAGTGCCAACCTGAGTCACAACTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAGTGTAGGAGAGTGCTGAAGTGGACATATGCATATGGGTACTATTTACCTGAGCATGAGCGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAATGTGCTGAAAAAGAACTACAACAGTTTCTCAGTGCTGATGGCCCATCTAAAGAATTCAATGACTTCCGTACAAAGTTAGCTGGATTGACTAGTGTGACAAAAAATTACTTCGAGAACTTAGTGAGGGCACTAGAGAATGGTCTATCTGATGTGGATGGTAATGGAGCTGCCATCAGCAAAGCAACAAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAACTGGGAGAGGAAAGGGAGCTTTCCGAACCACCATGACCAGCAGAACGTCTGATGATAGTCACTGGTGCTGTGACCATTGTACCTCTACAAATGTCAGATCTGCCACTGTATGCCAGATTTGCAATCAACGTCGATGA 1767 0.4329 MDSEDDMHDANDVESLEDDDDFYSGDTEDASMDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIRVRQEDDITRVAAVLSLSRVFASILLRHYNWSVSKVHDAWFADEERVRKAVGLLEKPVVQSPNARELTCGICFENHPRSVIEMASCGHPYCFTCWEGYISTSINDGPGCLMLRCPEPTCGSAIGQDMINLLASEEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKQFFEYLQGEAESGLERLHQCAEKELQQFLSADGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDGNGAAISKATSSKNAAGSSKGRTGRGKGAFRTTMTSRTSDDSHWCCDHCTSTNVRSATVCQICNQRR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03678 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 220 IPR013083 -
Car06g03678 588 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Car06g03678 588 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 536 - -
Car06g03678 588 CDD RING-HC_RBR_TRIAD1_like 138 188 - -
Car06g03678 588 Pfam IBR domain, a half RING-finger domain 207 269 IPR002867 -
Car06g03678 588 Pfam IBR domain, a half RING-finger domain 286 334 IPR002867 -
Car06g03678 588 Gene3D - 265 520 - -
Car06g03678 588 SUPERFAMILY RING/U-box 134 219 - -
Car06g03678 588 SMART ibrneu5 282 343 IPR002867 -
Car06g03678 588 SMART ibrneu5 207 269 IPR002867 -
Car06g03678 588 Pfam Ariadne domain 356 517 IPR045840 -
Car06g03678 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 536 IPR031127 GO:0004842|GO:0016567
Car06g03678 588 SUPERFAMILY RING/U-box 208 276 - -
Car06g03678 588 ProSiteProfiles Zinc finger RING-type profile. 138 182 IPR001841 -
Car06g03678 588 SUPERFAMILY RING/U-box 288 336 - -
Car06g03678 588 MobiDBLite consensus disorder prediction 529 556 - -
Car06g03678 588 ProSiteProfiles TRIAD supradomain profile. 134 347 IPR044066 -
Car06g03678 588 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03678 Car-Chr6 68521231 68529255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03678 16 588 ARIADNE family AT1G65430 69.948 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03678 K11968 - gmx:100784195 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02647 01 52079960 52088058 Car06g03678 06 68521231 68529255 PCT