Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03611 ATGATGAATTCAGATACGCAACCCGGAACGGCGTCGTACTGGTGCTACAGCTGCACCCGCTTCATTAACCTTTCAGATCACACCATCATCGTATGCCCTCACTGCGAAGGCGGTTTCGTTGAAGAGATCCAAGCCGGTGAATCGCCGCACCACCGTCTCAGTCCTTTCTCCGACGACACCATCTCTTCAAGGAGGCAAGGGTTCCGCCGCAGACGCCGCGACGCTGGAAGTCGTTCCCCTTTCAACCCTGTCATCGTCCTTCGTGGAACCGGCGACGATGGCCCCGATCAAGACGGCGGTAGCGCCTTCGAACTTTTTTACGACGACGGCGACGGTTCAGGTCTCCGCCCTCTGCCGCCGACAGTTTCAGAGTTTTTGCTTGGATCTGGTTTCGATCGGTTGCTTGAGCAGTTTTCGCAGATCGAAATGAACGGTTTTGGACGGCCGGAGAATCCGCCGGCTTCAAAGGCGGCAATCGAGTCGATGCCGACGGTTGAGATCTGTGAGGCGCAAGTTAGTTGCGAAATGCACTGTGCAGTTTGCAAAGAAGCGTTTGAACTGGGCGTGGAAGCGCGTGAACTACCCTGCAAGCATATTTACCATTCCGATTGCATTCTTCCATGGTTAACGGTGCGGAACTCGTGCCCTGTGTGCCGCCACGAGCTTCCTTCCGATATTAACCCTATGGAAACTAGGGTTTCTGGTCAAATCGACGAAGAATCGATAGGGTTAACGATATGGAGGTTGCCTGGTGGTGGATTCGCCGTCGGTAGATTTTCCGGTGGACGGAGTGCGGGGGAGAGTCATTTTCCGGTTGTGTACACGGAGATGGATGGCGGTCTTAACGCAAACGGAGCTCCGAGAAGAATTTCTCGAACGATTAGAAGCAATAGGGTTAGGGAAAGTCGTGGATTTGGAAGAGCTTTTCGTAATTTCTTCTCATTCTTTGGAAGAATCGGTTCTAGGTCTGGTTCTCCTTCGTCCTCTCTATCAACTTCGTATTCTGGTTCTGAGAATGTTTCTGTGAGTAGAAGCCGTAGCTTAGTGAATTCAATGTTCAATAGAAATTCAAGGAGACGTAGGAGGACTTTGGTTCTGGAAGATTGA 1107 0.5158 MMNSDTQPGTASYWCYSCTRFINLSDHTIIVCPHCEGGFVEEIQAGESPHHRLSPFSDDTISSRRQGFRRRRRDAGSRSPFNPVIVLRGTGDDGPDQDGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEAQVSCEMHCAVCKEAFELGVEARELPCKHIYHSDCILPWLTVRNSCPVCRHELPSDINPMETRVSGQIDEESIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRISRTIRSNRVRESRGFGRAFRNFFSFFGRIGSRSGSPSSSLSTSYSGSENVSVSRSRSLVNSMFNRNSRRRRRTLVLED 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03611 368 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Car06g03611 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 225 IPR013083 -
Car06g03611 368 MobiDBLite consensus disorder prediction 49 101 - -
Car06g03611 368 SUPERFAMILY RING/U-box 158 227 - -
Car06g03611 368 Pfam Protein of unknown function (DUF1117) 242 356 IPR010543 -
Car06g03611 368 CDD RING-H2_RNF126_like 178 219 - -
Car06g03611 368 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Car06g03611 368 Pfam Ring finger domain 177 219 IPR001841 -
Car06g03611 368 PANTHER OS05G0110000 PROTEIN 10 306 - -
Car06g03611 368 SMART ring_2 178 218 IPR001841 -
Car06g03611 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03611 Car-Chr6 67447616 67449661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03611 117 230 C3H Transcription Factor Family AT5G01980 44.737 5.36e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03611 - - gmx:100804867 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03611 06 67447616 67449661 Car06g03611 06 67447616 67449661 ECH
Car06g03611 06 67447616 67449661 Car01g02598 01 51652247 51653669 ECH
Car03g01138 03 53699311 53701052 Car06g03611 06 67447616 67449661 ECH
Car01g02598 01 51652247 51653669 Car06g03611 06 67447616 67449661 PCT