Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g03611 | ATGATGAATTCAGATACGCAACCCGGAACGGCGTCGTACTGGTGCTACAGCTGCACCCGCTTCATTAACCTTTCAGATCACACCATCATCGTATGCCCTCACTGCGAAGGCGGTTTCGTTGAAGAGATCCAAGCCGGTGAATCGCCGCACCACCGTCTCAGTCCTTTCTCCGACGACACCATCTCTTCAAGGAGGCAAGGGTTCCGCCGCAGACGCCGCGACGCTGGAAGTCGTTCCCCTTTCAACCCTGTCATCGTCCTTCGTGGAACCGGCGACGATGGCCCCGATCAAGACGGCGGTAGCGCCTTCGAACTTTTTTACGACGACGGCGACGGTTCAGGTCTCCGCCCTCTGCCGCCGACAGTTTCAGAGTTTTTGCTTGGATCTGGTTTCGATCGGTTGCTTGAGCAGTTTTCGCAGATCGAAATGAACGGTTTTGGACGGCCGGAGAATCCGCCGGCTTCAAAGGCGGCAATCGAGTCGATGCCGACGGTTGAGATCTGTGAGGCGCAAGTTAGTTGCGAAATGCACTGTGCAGTTTGCAAAGAAGCGTTTGAACTGGGCGTGGAAGCGCGTGAACTACCCTGCAAGCATATTTACCATTCCGATTGCATTCTTCCATGGTTAACGGTGCGGAACTCGTGCCCTGTGTGCCGCCACGAGCTTCCTTCCGATATTAACCCTATGGAAACTAGGGTTTCTGGTCAAATCGACGAAGAATCGATAGGGTTAACGATATGGAGGTTGCCTGGTGGTGGATTCGCCGTCGGTAGATTTTCCGGTGGACGGAGTGCGGGGGAGAGTCATTTTCCGGTTGTGTACACGGAGATGGATGGCGGTCTTAACGCAAACGGAGCTCCGAGAAGAATTTCTCGAACGATTAGAAGCAATAGGGTTAGGGAAAGTCGTGGATTTGGAAGAGCTTTTCGTAATTTCTTCTCATTCTTTGGAAGAATCGGTTCTAGGTCTGGTTCTCCTTCGTCCTCTCTATCAACTTCGTATTCTGGTTCTGAGAATGTTTCTGTGAGTAGAAGCCGTAGCTTAGTGAATTCAATGTTCAATAGAAATTCAAGGAGACGTAGGAGGACTTTGGTTCTGGAAGATTGA | 1107 | 0.5158 | MMNSDTQPGTASYWCYSCTRFINLSDHTIIVCPHCEGGFVEEIQAGESPHHRLSPFSDDTISSRRQGFRRRRRDAGSRSPFNPVIVLRGTGDDGPDQDGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEAQVSCEMHCAVCKEAFELGVEARELPCKHIYHSDCILPWLTVRNSCPVCRHELPSDINPMETRVSGQIDEESIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRISRTIRSNRVRESRGFGRAFRNFFSFFGRIGSRSGSPSSSLSTSYSGSENVSVSRSRSLVNSMFNRNSRRRRRTLVLED | 368 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g03611 | 368 | ProSiteProfiles | Zinc finger RING-type profile. | 178 | 219 | IPR001841 | - | |
Car06g03611 | 368 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 225 | IPR013083 | - | |
Car06g03611 | 368 | MobiDBLite | consensus disorder prediction | 49 | 101 | - | - | |
Car06g03611 | 368 | SUPERFAMILY | RING/U-box | 158 | 227 | - | - | |
Car06g03611 | 368 | Pfam | Protein of unknown function (DUF1117) | 242 | 356 | IPR010543 | - | |
Car06g03611 | 368 | CDD | RING-H2_RNF126_like | 178 | 219 | - | - | |
Car06g03611 | 368 | Pfam | zinc-ribbon | 12 | 43 | IPR039525 | GO:0061630 | |
Car06g03611 | 368 | Pfam | Ring finger domain | 177 | 219 | IPR001841 | - | |
Car06g03611 | 368 | PANTHER | OS05G0110000 PROTEIN | 10 | 306 | - | - | |
Car06g03611 | 368 | SMART | ring_2 | 178 | 218 | IPR001841 | - | |
Car06g03611 | 368 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 10 | 306 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car06g03611 | Car-Chr6 | 67447616 | 67449661 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car06g03611 | 117 | 230 | C3H Transcription Factor Family | AT5G01980 | 44.737 | 5.36e-27 | 109 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g03611 | - | - | gmx:100804867 | 474.167 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car06g03611 | 06 | 67447616 | 67449661 | Car06g03611 | 06 | 67447616 | 67449661 | ECH | |
Car06g03611 | 06 | 67447616 | 67449661 | Car01g02598 | 01 | 51652247 | 51653669 | ECH | |
Car03g01138 | 03 | 53699311 | 53701052 | Car06g03611 | 06 | 67447616 | 67449661 | ECH | |
Car01g02598 | 01 | 51652247 | 51653669 | Car06g03611 | 06 | 67447616 | 67449661 | PCT |