Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03586 ATGGAAGGTGATAAAGTAAGCGTTGTAATTGACCTATTGAATGAGATAGCTAACATCTCAGACTTCAGACCTATGGTGAAGAAACAATATTGTAATTTAGCACGAAGATTGAAGCTGTTGATCCCTTTGTTTGAAGAGATTAGGGATATGAAAGGTTCAATCCCTAAGCATACTTCAAAAGCCATTATTTCGTTCAAGGAAGCACTTGAATCAGCTAGGGAAATTCTCAGATTTGGAAGTGAAGGAAGCAAGATTTTCATGGTCCTAGAGAGGGACCAGATTATGAATAATTTCTATGAGGTGACAGCTCGGTTGGAACAATCACTGGATGGAATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGACCTGGTTCTTGCTCAGTTCAGAAGAGCCAAAGGGAGAGTTGATGATCCGGATGTCAAGTTGTATGAGGATATCTCATCCCTTTACACTAATAGCAATGATACAGCTACAGATCCTGCTCTTTTAAGTCGATTAGCAGACAAATTGCAATTGATGGGAATAGCCGATCTTACACAGGAATCACTCGCTTTGCATGAGATGGTGGCAGCAAGTGGTGGGGATCCAGGGGCACGCATTGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACCTAGTCAAGGATGATGCTGTAATAGGAAAAACCCTTTCTTCAGGATTTTACGGACTAGGGGCAAATGATAAGAATCATCAGGTCCCCACTATCCCTAGTGATTTTAAATGTCCAATTTCCCTGGAATTGATGAAAGATCCTGTCATTGTTTCTACTGGACAGACTTATGAGCGTTCCTGTATTGAGAAGTGGTTGCAAGACGGTCACGGGACATGTCCGAAAACACAGCAGAGTCTCACCAGTACCGTTCTCACACCCAACTATGTCTTACGAAGCCTGATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGTTCTGAGCCTAGCAAATCAGCATCAGCCTGCTCCCCAGCTGAGCGAAGTAAGATTGAAAGTCTTATCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCCGGTGAGATTCGCCTTCTTGCAAAACGCAATGCAGATAACCGTGTAGCTATTGCTGAAGCTGGTGCAATACCTCTCCTTGTTGGTCTCCTCTCCGTGCCAGACTCCCGCACTCAAGAGCATGCTGTGACAGCGCTTTTGAATCTCTCCATATACGAGAGTAACAAAGGAAGCATTGTATCTTCAGGAGCAGTTCCCGGCATAGTTCATGTGCTGAAGAGAGGAAGCATGGAAGCCCGGGAAAACGCAGCAGCAACACTTTTCAGCCTTTCAGTTATCGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCCATATCACCGTTGGTGACACTGCTGAGTGAGGGCACCCAAAGAGGTAAGAAAGATGCTGCAACAGCACTCTTCAACTTGTGCATTTACCAGGGAAACAAGGGTAAGGCAGTGAGGGCCGGTGTTATTCCCACGCTGATGCGACTGCTGACAGAACCTACTGGTGGAATGGTGGATGAAGCATTGGCCATTTTAGCAATTTTGGCTAGTCATCCCGATGGAAAAGCTGCCATTGGTGCTGCAGAGGCAGTGCCAGTTTTGGTAGAGTTTATTGGGAACGGATCCCCGAGGAACAAAGAGAATGCAGCTGCGGTTTTAGTTCACCTTTGTTCTGGAGATCGACAATATCTAGTGCAAGCACAAGAGCTAGGAGTGATGGCTCCATTGTTGGAGTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCAACGCAATTGATAGAGCGTATGAGCAGGTTCCGTGAGCAGGAGCTGCAAGAAGTTATGACACAAATGGATCTTCAAGTTCCGAACGATGATATCCAACCACCTTTGATCATTAACCTTGAAGACACCTGA 1986 0.4481 MEGDKVSVVIDLLNEIANISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKGSIPKHTSKAIISFKEALESAREILRFGSEGSKIFMVLERDQIMNNFYEVTARLEQSLDGISYDKLDISDEVKEQVDLVLAQFRRAKGRVDDPDVKLYEDISSLYTNSNDTATDPALLSRLADKLQLMGIADLTQESLALHEMVAASGGDPGARIEKMSMLLKKIKDHVQIENLVKDDAVIGKTLSSGFYGLGANDKNHQVPTIPSDFKCPISLELMKDPVIVSTGQTYERSCIEKWLQDGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSSSEPSKSASACSPAERSKIESLIQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGSIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPTGGMVDEALAILAILASHPDGKAAIGAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDRQYLVQAQELGVMAPLLELAQNGTDRGKRKATQLIERMSRFREQELQEVMTQMDLQVPNDDIQPPLIINLEDT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03586 661 MobiDBLite consensus disorder prediction 328 348 - -
Car06g03586 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 328 IPR013083 -
Car06g03586 661 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Car06g03586 661 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Car06g03586 661 Gene3D - 3 114 IPR036537 GO:0007166
Car06g03586 661 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Car06g03586 661 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Car06g03586 661 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Car06g03586 661 Gene3D - 343 530 IPR011989 -
Car06g03586 661 CDD RING-Ubox_PUB 259 301 IPR045210 -
Car06g03586 661 SUPERFAMILY ARM repeat 353 640 IPR016024 -
Car06g03586 661 SUPERFAMILY RING/U-box 245 331 - -
Car06g03586 661 SMART arm_5 505 545 IPR000225 GO:0005515
Car06g03586 661 SMART arm_5 382 422 IPR000225 GO:0005515
Car06g03586 661 SMART arm_5 423 463 IPR000225 GO:0005515
Car06g03586 661 SMART arm_5 588 628 IPR000225 GO:0005515
Car06g03586 661 SMART arm_5 464 504 IPR000225 GO:0005515
Car06g03586 661 SMART arm_5 546 586 IPR000225 GO:0005515
Car06g03586 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Car06g03586 661 PANTHER U BOX DOMAIN-CONTAINING 5 643 - -
Car06g03586 661 Gene3D - 531 644 IPR011989 -
Car06g03586 661 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Car06g03586 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Car06g03586 661 MobiDBLite consensus disorder prediction 332 348 - -
Car06g03586 661 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03586 Car-Chr6 67133042 67138447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03586 1 652 U-box Gene Family AT3G46510 67.176 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03586 - - gmx:100812160 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03586 06 67133042 67138447 Car06g03586 06 67133042 67138447 ECH