Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03573 ATGCACAAAACCCCGATAGTGTGTGCTAGAGCTCTTCTTTTTCAGACTTATGCATTACCCTTACCTCAATTCTTACTATCCGTGCGTCATCATTCATCTACCAATTTGTTCGTCGCAGGGCTTTCCTATAACACTAATGAAACTGTTCTCAGAGACACCTTTGGACACCATGGCCAAATCATCGAAGTTAGAGTAATTTGTGACCACAAGACTGGGGAATCGCAAGGGTATGGATTTGTGAGGTTCAATTCTGAAACTGCAGCTGCCACAGCTCGCAAAGAATTGCACGGCCAGATCGTGGATGGCAGACGAATTCGAGTGAGTTATGCGCACAAAGGGTAA 342 0.4503 MHKTPIVCARALLFQTYALPLPQFLLSVRHHSSTNLFVAGLSYNTNETVLRDTFGHHGQIIEVRVICDHKTGESQGYGFVRFNSETAAATARKELHGQIVDGRRIRVSYAHKG 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03573 113 Gene3D - 22 113 IPR012677 -
Car06g03573 113 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Car06g03573 113 SMART rrm1_1 35 108 IPR000504 GO:0003723
Car06g03573 113 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 20 112 - -
Car06g03573 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Car06g03573 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Car06g03573 113 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 20 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03573 Car-Chr6 66962529 66964068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03573 34 112 Eukaryotic Initiation Factors Gene Family AT3G16380 43.038 2.06e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03573 K13195 - gmx:100306540 149.058