Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03572 ATGTCTGCAGCTCTCGATATGACCCTCGAAGACATCATCAAGAACAACAAAAAATCTGGATCCGGAAACCCTAGAGGTCGCTCCAGACCCGGACCCGGACCTGCTCGCCGTTTACCTAACCGTGTCTCCAACCACGCCGCACCTTACTCCGCCGCTAAGGCTCCGGAGACGACGTGGCAGCATGATTTGTATGCAGATCAACCCGTGGCTGCGGCAGCTTACTCTGCTCAAGGTGGTCGTGCGCCTTCGATAGAAACTGGAACCAAGCTCTATATTTCTAATTTGGATTACGCTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGGCACGGCGTTCATTATGACAGGAGTGGTAGATCGAAGGGTACAGCAGAAGTAGTTTTCTCACGACGACAAGATGCGGTTGCTGCTGTAAAGAGATACAACAATGTTCAACTAGATGGGAAACCAATGAAGATAGAGATTGTTGGAACCAACATTTCTACACCTGGTGTGGCTCCTGCTGTAAATGGAGCTATTGGAAATTTTAATGGAATTCCTCAAAGTGGACAAGGACGAGGCGGGGCATTACGAGGGCCTGGAGGTAGAGGTCAAGGCATTCGAAGGAATCAAGGACgtggaagaggtagcggaggaggtcgtggtggtggtcgtggtggtggccgtggtggtggtCGAGACCAAAAGGTATCTGCAGAAGATCTTGATGCTGAGCTGGAGAGGTATCATGCAGAGGCCATGCAAATAAACTGA 774 0.4483 MSAALDMTLEDIIKNNKKSGSGNPRGRSRPGPGPARRLPNRVSNHAAPYSAAKAPETTWQHDLYADQPVAAAAYSAQGGRAPSIETGTKLYISNLDYAVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAVNGAIGNFNGIPQSGQGRGGALRGPGGRGQGIRRNQGRGRGSGGGRGGGRGGGRGGGRDQKVSAEDLDAELERYHAEAMQIN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03572 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Car06g03572 257 MobiDBLite consensus disorder prediction 184 243 - -
Car06g03572 257 Coils Coil 239 257 - -
Car06g03572 257 SMART rrm1_1 89 161 IPR000504 GO:0003723
Car06g03572 257 Gene3D - 43 162 IPR012677 -
Car06g03572 257 SUPERFAMILY RNA-binding domain, RBD 30 162 IPR035979 GO:0003676
Car06g03572 257 SMART FoP_duplication_2 187 257 IPR025715 -
Car06g03572 257 MobiDBLite consensus disorder prediction 1 53 - -
Car06g03572 257 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 256 - -
Car06g03572 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Car06g03572 257 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 256 - -
Car06g03572 257 CDD RRM_THOC4 88 162 - -
Car06g03572 257 Pfam C-terminal duplication domain of Friend of PRMT1 197 251 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03572 Car-Chr6 66950926 66954538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03572 87 216 Eukaryotic Initiation Factors Gene Family AT1G71770 28.859 3.69e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03572 K12881 - gmx:100775827 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03572 06 66950926 66954538 Car06g03572 06 66950926 66954538 ECH