Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03563 ATGCCGATTTCTAGAATTGCAATTGGAAGTCCTTCTGAGTTTGGCAAAGCTGATGCACTTAAGGCTGCACTTGCTGAGTTCATCTCAATGCTCATCTTTGTCTTTGCAGGGGAAGGCTCTGGCATGGCATATAATAAGCTTACAAACAATGGTGCAGCAACACCAGCTGGGTTGGTAGCTGCATCACTGTCACAtgcttttgctctttttgttgctgtctctgttggtgCTAACATCTCTGGTGGACATGTCAATCCTGCTGTTACATTTGGTGCCTTCATTGGTGGCCACATTACACTTATTAGAGGCCTTTTGTATTGGAttgctcagttgcttggttctgttgttgcttgcttgctCCTTAAAATTGCCACTGGTGGATTGGAAACATCTGCATTCTCATTGTCTTCAGGAGTGGGAGCAACAAATGCACTTGTGTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACAGTGTATGCCACTGCAGTAGACCCAAAGAAGGGTGACCTTGGAACAATTGCTCCAATTGCCATTGGTTTCATTGTAGGGGCCAACATATTAGCAGGTGGTGCTTTTGATGGTGCCTCCATGAACCCAGCAGTCTCTTTTGGGCCTGCTGTTGTTAGCTGGACATGGACTAATCATTGGGTCTATTGGGTCGGCCCATTGATCGGTTCTGCTGTCGCTGCAGTTGTGTATGAGATTTTCTTCATCACCCCTAGCTCTTATGAACAGTTACCGGTCGCAGATTATTAG 759 0.4124 MPISRIAIGSPSEFGKADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGAATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLIRGLLYWIAQLLGSVVACLLLKIATGGLETSAFSLSSGVGATNALVFEIVMTFGLVYTVYATAVDPKKGDLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWVGPLIGSAVAAVVYEIFFITPSSYEQLPVADY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03563 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Car06g03563 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Car06g03563 252 SUPERFAMILY Aquaporin-like 18 243 IPR023271 -
Car06g03563 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g03563 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Car06g03563 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g03563 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g03563 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g03563 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g03563 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g03563 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g03563 252 CDD MIP 26 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g03563 252 Coils Coil 252 252 - -
Car06g03563 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03563 Car-Chr6 66864932 66867220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03563 1 252 Major Intrinsic Protein MIP AT4G01470 78.571 2.51e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03563 K09873 - gmx:100777419 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03563 06 66864932 66867220 Car06g03563 06 66864932 66867220 ECH