Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03540 ATGTATACAAACTTCCACACCACTTTCTCACGCGCCACTGACACGTCACCATTACATTGCCCCACTACACCTCTTCAACCCCAACTCATTACCTTCAACGAGTCCGACTCGCTTCTCGACTCACTCTCCCAACTCAACTCAGAAACGAGTTACAATAATGCTGCTGCTGTTGGTGGTAGTTATAATAGTTGTAGCAGTGGCTGCACTAGTTACATGGGCTCACCGAGTTCTCTGGCGAGTTACGAAACTCAACGAGTTTCGAATGGTTTGATACAGAGGAGTATTAGTAGCCACTCGCTGCAAAAGAGTGATGGGCCCCACTATCACCCTTTTATGTTTGCTGAATTGCTTGATCAGGATAATGGTCCGGTGCGGCGAGTTTACAGTGCCGGTGATCTTCAGAGGGTTAATGGAATGCAACAACATTATCATCAATCAGATAGTCCTTTGTCAATAGAGAGTAGCATGATAATTGAAGAAATTAACAGAGCAGCTAGTCCTTACAGCCCACAGGAAAAGAGGATGAGGATTGAGAGATATAGAAGCAAGAGAAACCAGAGGAACTACACCAAGAAAATTAAGTATGTTTGTAGGAAGACATTGGCAGACAGTAGGCCACGTATTAGAGGAAGATTTGCTAGGAATGATGAAATTGTAATGAACCCTCCAAATCAATGGAGCAATATTATTAGTAATGGAGATGAATTAGAAGATGAGGAAGATGAAAATTGGGCCAATTTATTTGATTCATTGGCACCTACTTCAAATCTTGCTCAAGAGCCTCAACATAGTTCCTCTTTTGATGTGTTCTACTAA 816 0.4228 MYTNFHTTFSRATDTSPLHCPTTPLQPQLITFNESDSLLDSLSQLNSETSYNNAAAVGGSYNSCSSGCTSYMGSPSSLASYETQRVSNGLIQRSISSHSLQKSDGPHYHPFMFAELLDQDNGPVRRVYSAGDLQRVNGMQQHYHQSDSPLSIESSMIIEEINRAASPYSPQEKRMRIERYRSKRNQRNYTKKIKYVCRKTLADSRPRIRGRFARNDEIVMNPPNQWSNIISNGDELEDEEDENWANLFDSLAPTSNLAQEPQHSSSFDVFY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03540 271 MobiDBLite consensus disorder prediction 1 20 - -
Car06g03540 271 Pfam CCT motif 175 215 IPR010402 GO:0005515
Car06g03540 271 PANTHER CCT MOTIF PROTEIN 23 271 - -
Car06g03540 271 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 271 IPR045281 GO:0009909
Car06g03540 271 ProSiteProfiles CCT domain profile. 173 215 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03540 Car-Chr6 66562648 66566043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03540 165 233 C2C2-CO-like Transcription Factor Family AT5G24930 37.681 3.86e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car06g03540 CCT 2.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03540 - - gmx:102667610 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03540 06 66562648 66566043 Car06g03540 06 66562648 66566043 ECH
Car01g02545 01 51184233 51186163 Car06g03540 06 66562648 66566043 PCT