Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03530 ATGTTAGATCTTAATCTTAACGATGCGAACTCGACCGATTCAACTCAGAACAACGACTCGCCAATGATTTCGGAGAAGTTTCCCCAAACTTCCTGGAATCAAATGGTGGAATCAGGAACATCGAATTCCTCAATCGTCAATGCGGGCGGTTCAAGCAACAACGCTAACGATGAGGACTCGTGCTCCACGCGCGCCGATGACGCGTTCACTTTCAATTTCGATATCCTTAAAGTGGAAGGTTCAAATTCAAACGACATCGTAACGAAGGAACTATTTCCTGATAGTGGAGGAGGAGATGAAAGATGGTCTAAGAATTTGCAGTGGCAGAATACGTCGTCGTTTCCAACGAGAAATGGTACTTCAGTTGATCTCTCGTTTAAACAGTTATGTGGAAACGAAGAGATGAAGATGGTTCAGGTTCAGCCTCAACAACAAGCTAAGAAGAGTAGAAGAGGACCAAGGTCTCGAAGCTCGCAATACAGAGGAGTTACTTTCTACAGAAGGACTGGAAGATGGGAATCGCATATCTGTTTTGACGAAATTTATTGTTTGAATTTTATAGGTGGATTTGACACAGCTCACGCTGCTGCTAGAGCTTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGGTGCTGATATAAATTTCAATTTGAATGATTATGATGATGATCTTCAACAGGCGAAGAATTTATCCAAAGAGGAATTTGTGCACATACTTCGTCGGCAAAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACACCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATAAAAAACAATGCAAGGGAAGCAGTGACTAATTTTGAGCCTAGTACATACGAAGGAGAGCTGAAATCTACAGCCATCATTGAAGGTGGCAGCCAAAATCTTGATCTCAATTTGGGCATAGCCACACCAGGAACTGGTCCCAAAGAAAATTTGGGGAAATTTCACTTCCCCTCGATCCCTTACACCATGCAAGCTGGAAGAAGTTCAATGGAAAGAGCAGAGAGTATCAGCAAAGATCCTTCTAAAGGACTCCCCAATTGGGGGTGGCAAACTCATGGCCAGGTCACTGCTACCCCATTGCCAGCGGTCTCTATTGCAGCATCATCAGGATTCTCAATTTCACCACCTTCCTTTCCATCAACCGCCATATTTCCACCAAGATCTATGAACTCAATTCCTCAGAGTCTCTATTTTACTTCGTCCAATGCACCTAGCAGCAATGCATTGCAAAATTATTATCAGGTTAATCCCCCGCAGGCACCACCCTAG 1380 0.4384 MLDLNLNDANSTDSTQNNDSPMISEKFPQTSWNQMVESGTSNSSIVNAGGSSNNANDEDSCSTRADDAFTFNFDILKVEGSNSNDIVTKELFPDSGGGDERWSKNLQWQNTSSFPTRNGTSVDLSFKQLCGNEEMKMVQVQPQQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHICFDEIYCLNFIGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYDDDLQQAKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDTEVEAARAYDKAAIKNNAREAVTNFEPSTYEGELKSTAIIEGGSQNLDLNLGIATPGTGPKENLGKFHFPSIPYTMQAGRSSMERAESISKDPSKGLPNWGWQTHGQVTATPLPAVSIAASSGFSISPPSFPSTAIFPPRSMNSIPQSLYFTSSNAPSSNALQNYYQVNPPQAPP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03530 459 Pfam AP2 domain 252 301 IPR001471 GO:0003700|GO:0006355
Car06g03530 459 Pfam AP2 domain 159 209 IPR001471 GO:0003700|GO:0006355
Car06g03530 459 SUPERFAMILY DNA-binding domain 158 218 IPR016177 GO:0003677
Car06g03530 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 345 - -
Car06g03530 459 ProSiteProfiles AP2/ERF domain profile. 253 310 IPR001471 GO:0003700|GO:0006355
Car06g03530 459 Gene3D AP2/ERF domain 158 219 IPR036955 GO:0003700|GO:0006355
Car06g03530 459 Gene3D AP2/ERF domain 252 311 IPR036955 GO:0003700|GO:0006355
Car06g03530 459 CDD AP2 252 312 IPR001471 GO:0003700|GO:0006355
Car06g03530 459 MobiDBLite consensus disorder prediction 138 159 - -
Car06g03530 459 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 345 - -
Car06g03530 459 SUPERFAMILY DNA-binding domain 252 311 IPR016177 GO:0003677
Car06g03530 459 MobiDBLite consensus disorder prediction 1 59 - -
Car06g03530 459 ProSiteProfiles AP2/ERF domain profile. 159 217 IPR001471 GO:0003700|GO:0006355
Car06g03530 459 SMART rav1_2 159 223 IPR001471 GO:0003700|GO:0006355
Car06g03530 459 SMART rav1_2 253 316 IPR001471 GO:0003700|GO:0006355
Car06g03530 459 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03530 Car-Chr6 66372483 66376181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03530 83 336 AP2-EREBP Transcription Factor Family AT4G36920 63.670 7.60e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Car06g03530 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03530 K09284 - gmx:100788303 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03530 06 66372483 66376181 Car06g03530 06 66372483 66376181 ECH
Car06g03530 06 66372483 66376181 Car01g02464 01 50360637 50365206 ECH
Car01g02464 01 50360637 50365206 Car06g03530 06 66372483 66376181 PCT