Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03517 ATGGACTCACCCGAAGACTTACAGTTCTTGTTATCGGCGCACCGCCACGCACTCACGGAGGCGGAAGCCATGGAATCCGATCTCGACTTCGCTTTCCATCTCCAGGTACAGGAAGCCCTTGCCGCTTCCCTAGTCAATCATCCCTCTTCCTCCATCGCCGTCACATTCGAACCACCCACCCTCAACGACGACGTTTTGAACGCAACCTCTATCCAGTTGAAAGAACTCGAAAAAATGGAAACCGAAATGAAAGACAGGGAATACAGCGAGAGAGTAATGCGCGAAGCGAGAGACGATCTTAACCGTCGGATTCACGATCAGAAAATGGCGTCGGAGATTCTCAATATGCCCGAAGACGAATGGGAGCAATGGGGAGGTAACTTCGAGAAACCGTTCGGTGAAGGTAGTAGTTCTTCTGGCTCGAAGAGTGGTAACGATGAAGTTTCTAAACCTGTTGTTGGTAGTGGAAATAGTAAAGTTGCTGTGGAACTTAAGGCTTTGATTGAAGCTTTCGATGCTGCTATTGCTTTGGACTTGAAGCGTGTTATTTGTTTTGGTGATCATTATCCTCTTTTTCAATTTTTAAGTGGAAAATGGCCTGCAAAACAGAGGAAAGTTGCTATGCTAGTTGATCAGGTGAATCTGCTTCAAAGAAAATTTGCATACTGCAGTCCAAGGCTTGTGGCGAGACATGATCAGAAATTTGCATTTAAGCTTGCAAAAGATGCAATTGTTTCTCAGTCAAAGAGACCTGCTGAATCTGGCAGTGTCAAGAGTATGAATGAAACTTGTGTCATTTGTTTGGAGGATACTGATGTTAGTCAATTCTTTTCAGTTGATGGTTGTCAACACAGGTATTGCTTTTCTTGCATGAAGCAACATGTGGAGGTGAAATTGCTCCATGGAATGGTGCCTAAATGCCCTCATGAGAAATGCAATAACGAACTTCTAGTTGATAGTTGCCGGAAATTCTTGACTTCTAAATTAGTTGAAACCATGCAGCAACGAAAATTGGAGGCTTCAATTCCACTTACGGAGAAAGTTTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAAGTGAAGTTTTAGACTACTCCAAAAGTGTTATTGCCTCGGTAGAATCGCAACCCATGAAATGCATAAAATGTCATGGTCTTTTCTGTTTCAGCTGCAAGGTCCCTTGGCATAGTGATATGACATGTTCTACTTACAAAAGACTGAATCCTAACCCTCCAGCAGAAGATATGAAGTTGAAGTTTCTGGCAAGAACGAGTCTTTGGCGGCAGTGTGTAAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGATGTGGTTATGAATTTTGCTATAACTGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTTCGTGTCCACTTTGGGAAGAGGACAATATTTTGTTACAAGACCCTGATGAGGAGCCAGAAGCAGACGAGGTTAATTCTGATTATTCTGATGATTGGTATTAG 1515 0.429 MDSPEDLQFLLSAHRHALTEAEAMESDLDFAFHLQVQEALAASLVNHPSSSIAVTFEPPTLNDDVLNATSIQLKELEKMETEMKDREYSERVMREARDDLNRRIHDQKMASEILNMPEDEWEQWGGNFEKPFGEGSSSSGSKSGNDEVSKPVVGSGNSKVAVELKALIEAFDAAIALDLKRVICFGDHYPLFQFLSGKWPAKQRKVAMLVDQVNLLQRKFAYCSPRLVARHDQKFAFKLAKDAIVSQSKRPAESGSVKSMNETCVICLEDTDVSQFFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEKCNNELLVDSCRKFLTSKLVETMQQRKLEASIPLTEKVYCPYPRCSALMSKSEVLDYSKSVIASVESQPMKCIKCHGLFCFSCKVPWHSDMTCSTYKRLNPNPPAEDMKLKFLARTSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCSCPLWEEDNILLQDPDEEPEADEVNSDYSDDWY 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03517 504 Pfam Zinc finger, C3HC4 type (RING finger) 264 308 IPR018957 GO:0046872
Car06g03517 504 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 147 484 IPR031127 GO:0004842|GO:0016567
Car06g03517 504 SUPERFAMILY RING/U-box 417 480 - -
Car06g03517 504 ProSiteProfiles TRIAD supradomain profile. 260 477 IPR044066 -
Car06g03517 504 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 151 IPR031127 GO:0004842|GO:0016567
Car06g03517 504 MobiDBLite consensus disorder prediction 125 152 - -
Car06g03517 504 MobiDBLite consensus disorder prediction 484 504 - -
Car06g03517 504 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 147 484 - -
Car06g03517 504 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 33 151 - -
Car06g03517 504 SUPERFAMILY RING/U-box 346 408 - -
Car06g03517 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 343 IPR013083 -
Car06g03517 504 ProSitePatterns Zinc finger RING-type signature. 282 291 IPR017907 -
Car06g03517 504 ProSiteProfiles Zinc finger RING-type profile. 264 311 IPR001841 -
Car06g03517 504 Pfam IBR domain, a half RING-finger domain 422 471 IPR002867 -
Car06g03517 504 Pfam IBR domain, a half RING-finger domain 333 403 IPR002867 -
Car06g03517 504 Coils Coil 66 86 - -
Car06g03517 504 Gene3D - 127 252 IPR036397 GO:0003676
Car06g03517 504 MobiDBLite consensus disorder prediction 132 152 - -
Car06g03517 504 SUPERFAMILY RING/U-box 262 343 - -
Car06g03517 504 SMART ibrneu5 404 473 IPR002867 -
Car06g03517 504 SMART ibrneu5 331 403 IPR002867 -
Car06g03517 504 Pfam Reverse transcriptase-like 149 243 IPR002156 GO:0003676|GO:0004523
Car06g03517 504 Gene3D - 400 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03517 Car-Chr6 66146155 66149967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03517 161 462 C3H Transcription Factor Family AT2G19610 35.621 7.94e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03517 - - aprc:113858620 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03517 06 66146155 66149967 Car06g03517 06 66146155 66149967 ECH