Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03510 ATGGATTTGGTACCAAGTATCAAGGAAAAATTAACGTATTTCCGCATAAAAGAGCTCAAAGATGTGCTGACTCAGTTAGGTCTTTCAAAGCAGGGAAAGAAGCAGGATCTCGTTGATCGCATATTATCCATTCTCTCAGATGAACAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTGGACGACACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCATCAAAGGGTCAGGTTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCCGAAGTTGAGGATTCCTTTCGATCAGCTACGAAGATCCGCTGTCTCTGTGGAAGTACATTGGAAACGGAGGATTTGATCAAGTGTGATGATGCAAGATGCCAAGTGTGGCAACACATCAGTTGTGTTGTTATTCCAGAGAAACCTATGGAAGGCATCCCCCCAGTTCCAGATAAATTTTATTGTGAACTATGTCGACTCAGTCGTGCAGACCCGTTTTGGGTTTCAGTGTCTCATCCTTTGTTACCCGTAAAGTTGACCACAACCAGTATTCCAACTGATGGTACCAACCCAGTGCAGTGTGTGGAGAGAACATTTCAACTCACAAGAGCAGACAAAGACATGGTATCAAAACAAGAATTTGAAGTCGAGGCTTGGTGTATGCTTCTGAATGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTAGCGGTCAATGGCCTTCCTGTTCGAGCAACTAACAGACCCGGTTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATTATCACAACGCCTGCAAAAGACGGAATTAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGCATTGTTAGAAGGCGCAGTTTGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCATTTTGAAGATGCTCTTGCACGCGTCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGACAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTTAAACCTTGCATTCACATGGGTTGTTTTGATCTTGATGTTTTTGTGGAAATGAATCAACGTTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTAGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATTAATTGTGGGGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGTCTGGATTTAGGGAATCTTGGCCAATGGCACTTTCCTAATGGGTCCCTCTGTGCTTCTATTGAAGGAGATATCAAAAGAGTAGAAACATTGAAGCAAGTAAAACAGGAAGGTTTTTCAGACGGACCTGCTGGTTTAAAACTTGGCATCAGGAAGAATTGCAATGGAATTTGGGAAGTCAGTAAACCTGAGGACACAAACACCTCTTCTGGTCGTAGATTGAAAGAGGTTTTTGGAAATCCGGAACATGTTGTTATTCCGATGAGCAGCAGTGGCACTGGAAGTGGTCGTGATGGTGATGATCCCAGTGTTAACCAGGGTGGTGGTGGTGGGCATATTGAATACCCTAATACCAATGGAATTGAGATGGATTCTCTGTCTCTCAATAATGTTGATTTAGCATGTGGATATACTGTGCATAACACATCTGCTCAGGTGGGTGGTGCAGAAGTGATTATTCTTAGTGATTCCGAAGAAGACAATGATATATTGGTATCTCCTGCAGTTGCACTTAAGAACGACCAAAATGATACTGCAGATGGTTACTCCATGCCACCGCCTGGAGTTGTTGACCCATATGTTGACGATCAGAACCTTGGTGGAAATTCATGCTTGGGGCTTTTTCCTAATGAAGATGATTTTGGGATGTCTTCCCTGTGGTCACTGCCTTCTGCTACTCAGGCTGGTCCAGGATTCCAATTATTTGGTTCTGATGCAGATGTGTCTGATGCATTGGTCCATTTGCAGCATGGTCCTATTAATTGCACCTCATCACTGAATGGTTATGCATTGGCTCCTGAAACTGCTTTGGGACCTAGTAGTCTCTTGCAAGATTCCTCTGCTGGTCGGTCAGATGCTGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCCTCGCTTCAGATTTTTCTCCCCACAAGACCAGCCGAGTCATCTGTGCAGAATGAATTGAGAGATCAAGCAAATGTCTCCAATGGTGTCTGCACTGACGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGCAGTAATGGTGATGCTCCCACTCAAAATGGATTGAACGCTAGACATCAAATCCCAGCCAGAGACAATGGCTCAAATACTTTGGCTGATTCTGCTTCTTTGCTTCTTGGTATGAATGATGTAAGATCTGACAAAGGAATTAGAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGCTCAGTAAGGCCCCGTTTGTACCTTTCTATTGATTCGGATTCGGAGTAA 2637 0.4342 MDLVPSIKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQVVSDSSNVKVKAEVEDSFRSATKIRCLCGSTLETEDLIKCDDARCQVWQHISCVVIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSVSHPLLPVKLTTTSIPTDGTNPVQCVERTFQLTRADKDMVSKQEFEVEAWCMLLNDKVPFRMQWPQYTDLAVNGLPVRATNRPGSQLLGANGRDDGPIITTPAKDGINKISLTVCDARIFCLGVRIVRRRSLQQILNLIPKESDGEHFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLDVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMINCGEDVTEVEVKPDGSWRVKAKSESERLDLGNLGQWHFPNGSLCASIEGDIKRVETLKQVKQEGFSDGPAGLKLGIRKNCNGIWEVSKPEDTNTSSGRRLKEVFGNPEHVVIPMSSSGTGSGRDGDDPSVNQGGGGGHIEYPNTNGIEMDSLSLNNVDLACGYTVHNTSAQVGGAEVIILSDSEEDNDILVSPAVALKNDQNDTADGYSMPPPGVVDPYVDDQNLGGNSCLGLFPNEDDFGMSSLWSLPSATQAGPGFQLFGSDADVSDALVHLQHGPINCTSSLNGYALAPETALGPSSLLQDSSAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSVQNELRDQANVSNGVCTDDWISLSLGGGAGGSNGDAPTQNGLNARHQIPARDNGSNTLADSASLLLGMNDVRSDKGIRRSDSPFSFPRQKRSVRPRLYLSIDSDSE 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03510 878 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Car06g03510 878 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Car06g03510 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Car06g03510 878 MobiDBLite consensus disorder prediction 800 828 - -
Car06g03510 878 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Car06g03510 878 SUPERFAMILY FYVE/PHD zinc finger 109 169 IPR011011 -
Car06g03510 878 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 809 - -
Car06g03510 878 SMART sap_9 11 45 IPR003034 -
Car06g03510 878 CDD SP-RING_Siz_plant 360 408 - -
Car06g03510 878 MobiDBLite consensus disorder prediction 805 828 - -
Car06g03510 878 MobiDBLite consensus disorder prediction 538 570 - -
Car06g03510 878 SUPERFAMILY SAP domain 2 64 IPR036361 -
Car06g03510 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Car06g03510 878 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Car06g03510 878 MobiDBLite consensus disorder prediction 540 554 - -
Car06g03510 878 SMART PHD_3 114 166 IPR001965 -
Car06g03510 878 Gene3D SAP domain 3 62 IPR036361 -
Car06g03510 878 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 809 - -
Car06g03510 878 Pfam PHD-finger 114 166 IPR019787 -
Car06g03510 878 Pfam SAP domain 14 42 IPR003034 -
Car06g03510 878 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03510 Car-Chr6 66031892 66042837 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car06g03510 PHD 2.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03510 - - aprc:113857557 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03510 06 66031892 66042837 Car06g03510 06 66031892 66042837 ECH
Car01g02479 01 50543749 50554782 Car06g03510 06 66031892 66042837 PCT