Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03508 ATGGAAATTGATCTGAACCATGAAGTGATGATGACTGAGGTTGAAAACAAGAATGCATTGTGCATTAAGGAATGTGAAAAAgttagttgttgttgttgtgtttgtagttTGTCCCCTTCAACTTGTTCATCTTCTACTAGTTCAACTTCACCAATTGTTGTGTCTTCTTCTTATCTTGAGCTCTGGCATGCTTGTGCTGGTCCTCTTACATCACTTCCTAAGAAAGGAAATGTTGTGGTTTATTTTCCACAAGGTCACTTAGAACAAGTTGCTTCTTTCTCTCCTTTCACATCATTGGAGATACCAACTTTTGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATATCCAACTACTTGCTAATAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAGGCTGAGTTGGCAGGGATGCATATGGAGGCAAaagaagttgaagaattagaagcagatgaagagggaaatgaagGATTACCAACAAAATCAACCCCTCACATGTTCTGCAAGACACTGACTGTCTCCGATACCAGCACTCATGGAGGGTTCTCTGTGCCTCGTCGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCTGCAGAGGCCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAATGGAAATTTCGCCATATTTATAGAGgtcagcctaggcggcatctactcactactggatggagcatttttgtgaaccaaaagaatcttgtttctggtgatgcagttctctttctaagGGGTGAAAATGGAGAGCTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGGTCTTCCTGAATCAATTGTTGGTAAACAGAACTGTTATCCCAATTTCCTTTCTTCTGTAGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTTTATAGTCCAAGAGCGAGTCACGCAGAATTCGTTGTTCCCTACCAAAAGTATGTTAAAAGCATCAAGAGTCCAGTATCCATAGGGACTAGATTCAAAATAAGATTTGAAATGGATGAATCGCCGGAGAGAAGGTGTAATAGTGGTATGTTGATTGGAATAAGTGACTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTTAGATGGGATGAGGATATTGAGACTAATCATCAAGACAGAGTATCTCCATGGGAGATCGATCCTTCTTCTTCTCTGCCTCCCCTAAGCATTCAGTCTTCTCCAAGGCTGAAGAAACCGCGGACCGGTCTGCAGGTTGCCTCACCCAGTCACCTCATCACTGCCGGAGGCAGTGGAATGATGGGCTTTGAGGAGTCTATAAGATCATCAAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTATGTCACTATACTATGGATGTGACAAATTAACCAACAAGCCAGGTTTTGAGTTGAGCTCTTCAAGTCATCAAAATCTTGCATTAACAGGAGTAGGAAAAGCCGTTACCTCTTCTGAGCATATGAATGCTCACCCTTTCAGTTATGCAGCAGGCTTTATGGAAACCAACAGTTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAATTGAAATCACTTACACAAAAAGTCGATTCAAATATTGGTGCATGGGGAAATAATCCTAATGTAAGTTGCACAAATTTCAACCTCCGTCAAGCAACCAAACCAAACTTCCAATCTGCATATTTTCCTTATGGAGATATTTACAAAAATGGTCAAGCTAACATGTTTACCTCAAAGCACATGAATTTCCAGAGCGATAACGTCTCATTTAGCACGCCATCGATATTAGCAGGGAACATTAGAAATGAAGTTGGAAGATCTGAATTAAATCTTCCAAATGAAGATAAACTGCAGGACAACATTTCTGCATCTGTTTCATTAGGAGCTACAAACATTAAGGTTCCAAATGATAACAATGTCAAGGGAAAGGTAAATTCCTGCAAACTATTCGGGTTTCCTTTGTCTGCGGAAACTAGTTCACAAAATTTACAGAACACTGCAAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTGTTGATCTCTCGAGGTTGAACTGCTACGTCGATCTTCTGAGTGAACTTGAGAAACTATTTGGCATGGAAGGCCTTCTTAGAGACCATGATAAGGGATGGAGGATTCTCTACACTGACAGTGAGAATGACATAATGGTTGTAGGGGATGATCCATGGCATGAGTTTTGTGATGTTGTGTCCAAGATTCATATATATACCAAAGGCGAAGTGGAGAAAATGACATTTGGGATGACCAATGATGATACTCATAGCTCTTTGGAACAGGCACCAGTGATTATGGAACCTTCTAAGTCTTCCTCAGTGAGTCAGACAGATTATTCTCCAACAGTAGTTAGAGTCTAA 2424 0.3828 MEIDLNHEVMMTEVENKNALCIKECEKVSCCCCVCSLSPSTCSSSTSSTSPIVVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTSLEIPTFDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMHMEAKEVEELEADEEGNEGLPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGKQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKSPVSIGTRFKIRFEMDESPERRCNSGMLIGISDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSSSLPPLSIQSSPRLKKPRTGLQVASPSHLITAGGSGMMGFEESIRSSKVLQGQENAGFMSLYYGCDKLTNKPGFELSSSSHQNLALTGVGKAVTSSEHMNAHPFSYAAGFMETNSFPRVLQGQEICKLKSLTQKVDSNIGAWGNNPNVSCTNFNLRQATKPNFQSAYFPYGDIYKNGQANMFTSKHMNFQSDNVSFSTPSILAGNIRNEVGRSELNLPNEDKLQDNISASVSLGATNIKVPNDNNVKGKVNSCKLFGFPLSAETSSQNLQNTAKRSCTKVHKQGSLVGRAVDLSRLNCYVDLLSELEKLFGMEGLLRDHDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKGEVEKMTFGMTNDDTHSSLEQAPVIMEPSKSSSVSQTDYSPTVVRV 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03508 807 Gene3D - 170 274 IPR015300 -
Car06g03508 807 ProSiteProfiles PB1 domain profile. 679 761 IPR000270 GO:0005515
Car06g03508 807 MobiDBLite consensus disorder prediction 407 426 - -
Car06g03508 807 Pfam AUX/IAA family 669 763 IPR033389 -
Car06g03508 807 SUPERFAMILY CAD & PB1 domains 681 758 - -
Car06g03508 807 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677
Car06g03508 807 CDD B3_DNA 170 272 IPR003340 GO:0003677
Car06g03508 807 Gene3D - 335 408 - -
Car06g03508 807 SUPERFAMILY DNA-binding pseudobarrel domain 164 283 IPR015300 -
Car06g03508 807 PANTHER AUXIN RESPONSE FACTOR 41 795 - -
Car06g03508 807 Gene3D - 675 768 - -
Car06g03508 807 SMART B3_2 172 274 IPR003340 GO:0003677
Car06g03508 807 Pfam Auxin response factor 298 380 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car06g03508 807 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677
Car06g03508 807 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 795 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03508 Car-Chr6 66011218 66017725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03508 54 807 B3 DNA Binding Superfamily AT5G60450 60.818 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car06g03508 AUX_IAA 2.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03508 - - gmx:100783513 1246.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03508 06 66011218 66017725 Car06g03508 06 66011218 66017725 ECH
Car01g02480 01 50556347 50561675 Car06g03508 06 66011218 66017725 PCT