Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03505 ATGATGTCTAAACAACCCTTTTCTCCTCATTCCAACACCACCATGATGAAACCCTCCTCATCCAATAATCATCTTCAACAAACAAATCCAAACCCTAATCCAAATCCACCTAAGAAAAAAAGAAACCTACCAGGAACACCAGATCCAGATTCAGAAGTGATAGCTATGTCACCAAAGTCTTTGATGGCGACGAATCGATTCGTATGTGAAATATGCAACAAAGGTTTCCAAAGAGATCAGAATTTGCAGCTTCATCGACGAGGACACAACCTTCCATGGAAGCTGAAGCAAAGAACCAACAAAGAACAAATTAAGAAGAAGGTGTATGTGTGTCCTGAGAAAAGCTGTGTGCACAATGACCCTTGTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGAAAAGTGTTCCAAGAAATACGCGGTTCAATCTGATTGGAAAGCTCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGATTGCGGCACCATTTTCTCCAGGAAGGACAGTTTCATAACACATAGAGCTTTTTGTGACGCATTAACTGATGAAAGTGCAAAGATAACAACAGTTCCAGCAGCTTTAAGTAACTTCAGGAATGATCATTTGACAAATCCTCATCATCAAGCTCCAAGATTCCCTCAAATTTTTCCTGGATTTCAGTTTCACTCAGAATTTGTTGGTTCAGGAACATCATCAGAACCATTGGGAAATTACACTAACATTTCAGACTATAGTCAAAAGCTGAGGCTCCAACCACTATGGTCAAATTCTTCTTGCAATACTATGAATGATCTAGTGCAAACAATGGATGTGTTTGGATCACAAACACAGTTTATGAGTTACACAAATTCCaataataataataataataataataataTATGTTTACCAATGCTACATCATGGAGTAATATTgaagcaagaagaagaagaagaagaaaacaaagaTTTGTCTCATAGTGTAATAAGCTCTATGTACTTGAGTAGTCAGAATCCAGTGGATAATAACTTAGTCTTCAACAACAACAATGTGAATCACTTTGGCAATATTGTTGAGGGTCAAAAATTTTACAAGCAAAGTAATCATCATGAAGAATTGAATGAGTTGGTGAATTTGGAAGGTGGTGAGTATTTATTAAATGATTCAAACAATTCATTTGGAATTGTGAATTGTACAAAGAGTTTGGAATTTGTGGTAACTGAGCCGGTGGAGAAAGAAACAAGTACTACAAAACGACAGATGCATGATTCAAGTTCAAGAACTAAAAACCAAATGGGATTAACAAGAGATTTTCTTGGAGTTGGAGAGGATTCAATGAGTGGACCTTTTTTGCATCAAGAACTTAGTGAGTTTAATGGAATGGGATCATCAATTAGTAATTTGCAGAATCAGTATGGTGGTGGACATGGACACTACTGCTAG 1467 0.3586 MMSKQPFSPHSNTTMMKPSSSNNHLQQTNPNPNPNPPKKKRNLPGTPDPDSEVIAMSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEQIKKKVYVCPEKSCVHNDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTDESAKITTVPAALSNFRNDHLTNPHHQAPRFPQIFPGFQFHSEFVGSGTSSEPLGNYTNISDYSQKLRLQPLWSNSSCNTMNDLVQTMDVFGSQTQFMSYTNSNNNNNNNNNICLPMLHHGVILKQEEEEEENKDLSHSVISSMYLSSQNPVDNNLVFNNNNVNHFGNIVEGQKFYKQSNHHEELNELVNLEGGEYLLNDSNNSFGIVNCTKSLEFVVTEPVEKETSTTKRQMHDSSSRTKNQMGLTRDFLGVGEDSMSGPFLHQELSEFNGMGSSISNLQNQYGGGHGHYC 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03505 488 MobiDBLite consensus disorder prediction 420 441 - -
Car06g03505 488 SMART c2h2final6 109 139 IPR013087 -
Car06g03505 488 SMART c2h2final6 144 164 IPR013087 -
Car06g03505 488 SMART c2h2final6 67 89 IPR013087 -
Car06g03505 488 Gene3D Classic Zinc Finger 46 119 - -
Car06g03505 488 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Car06g03505 488 Pfam Zinc finger, C2H2 type 67 89 IPR013087 -
Car06g03505 488 MobiDBLite consensus disorder prediction 1 53 - -
Car06g03505 488 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Car06g03505 488 Gene3D Classic Zinc Finger 122 201 - -
Car06g03505 488 MobiDBLite consensus disorder prediction 1 29 - -
Car06g03505 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Car06g03505 488 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 15 456 - -
Car06g03505 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03505 Car-Chr6 65966149 65968806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03505 38 214 IDZ Gene Family AT3G45260 81.921 4.00e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g03505 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03505 K25870 - gmx:100817691 487.648