Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03492 ATGGCGGCCAATGCTGAACTATCTCCCTCTAAAATCCTAGACACAATCAACGTTCAGGATTCAACCCTCGAACCACATCTAACGGCTCCGCAAGACGCCCAAATTAACGAAGTAAAAgacgacgtcgtaccgaccgagaaacggaagagagacgacgccgacggcaacgataacgacgaagccgaTGGCAAGCGTTCTCTCCACCCGATGTGGAAAACCAGTATTTGTTCCTACTTCAGGAAACATGCCACCTGCCACCACGGAGACGCCTGCCGTTACGCACACAGCGAGGAGGAGCTCCGGCCTCGTCCGGACAACACGTGGGACCCGACGTCCGAGCGAGGGAAGAAAAAGGCTTTGAAATCAGTAACTGGTGAGAAACTTAACGTTACCGACGGGGTGATGATGACAGAGCTCGTTGATGAAGTTGATGGCGAAGGAGGTGATGATGGTTTTGCATCTAACCAGGCGCTCAGCAAATGCTTAGTGCACTTGCCGATGAAATGGAGCTCTGAGAATTTGAGGAATTTCCTCAATGAGCAGGGTATACCTTTTAAGCATGCCAAGACAAAGAAAGGAATGGCAATTGGTTTCGTTACTTTTGAAAATGAAGAACAAATGAAAAGTTCGTCAAAGGATTTATTAGGAAAACAAATTGGCAACAAAAAGTTAGAGGTAGCTGATGTTATTCCTCGATCATTTGAGAAGAAAAGTAACTCCAATGTTTCTTCAAATGGGACATGTGGTGCTGAAACAAATGATGATAATTTGGCAAATGATGGTTCAGAGTCAAAAGCAAGAAGCTCACGTGAAGCTGTGACTCCTCTTGCTCATATGTCCTATGCTGATCAATTGGAACAGAAAAAATACTCTCTAATGCAGATTCTCAAAAAACTTGTTAGTCATTATTGTTTCTATTTTACCATTGTAGTTTTAATATTTCTTTGGCCACTTATTTCTCACATTTCCGCAGGTGGTCTTCCATGCAATCTAGAGGGTATTATTGAATCACCAATTGTAAATGGATATCGTAATAAGTGTGAATTTTCAGTTGGATATTCCATGGAAGGCAAAGCAACAGTGGGCTTCAGTCTTGGAAATTTTAGGGAGGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAATATTTCTACCATTGCTTGCAAATATGCTGCTATCTTTCAAGAATTTCTACAGCACACTAATTTCCCAGTTTGGAACAGATTTAAAAATTGTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGTCAAATGGGAATGTTGCCGATGCTGAAACTTTTGACGGTATTGCAGAGGTCATGATTATTGTGCAGGTTTCTACTGCAAGTTTTGATGATGCACTAGTAGCCGCTGAATTTAAAAGGCTTGCTGAGTCATTTGTTACAGGAGCTACCTCTCATTGTCCAACTTTGCCCCTTACTGCTTTGGTTGTTCAGGATCACCAAGGAATATCCAACGTAGCACCATCTGATGCACCACTGCATTCACTTCCCATAGCAGTTGGTGATCCTGAGAGGGATGAAAACATCAGTGCTGCAGATGTGAGAATCCATGATTATATCAGCAATCTCCAGTTCTCTATATCTCCAACCTCATTTTTTCAGGTTAACACGCTTGCTGCTGAGAAATTATACTCCCTTGCTGGAGATTGGGCTTGCTTAGGTCCAGATACATTGCTATTTGATATATGCTGTGGGACAGGAGCAATTGGCCTTACATTAGCACATCGTGTTGGAATGGTGATTGGGATTGAAATGAACGCTGCTGCTGTATCTGATGCTCATAAGAATGCTGAGAATAATGGCATAAAAAACTGTAAATTTATCTGTGCAAAGGCAGAGCAAGTTATGGGATCTCTGTTAAAGGAATACCTTAATGTGCCCAAGGAACAAGTTGATGATCCTAATATCTCTGCAAGTGTTAATGACATGCCTGAAGATAGTGCCTGCCCAGAGCCCGGAAATGGTGAAAAGGCATCTAATTCTTCTGAAAATAATAATTCAGGAGTTGAAAATGAGGTTCCTAAGGATAGCACTTCCGAAAATGAGAATACTTCCATGCAACAGTTCAAAAATGTTGTTGCCATTGTTGATCCTCCCCGTGCTGGACTTCATCCAACTGTGATTAAAGCTTTAAGAACTCATACACACCTGCGGAGGCTCGTTTATATATCATGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCGCCGAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAGGATGAGTAGTGCTGGCCTAGCTCGGCATAGGGCCAAGTCTATGCCCATTTCAGAGGCCTTTAAACCCATAAAAGCCATGGCTGTTGATCTTTTTCCACATACTCAACATTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2439 0.4121 MAANAELSPSKILDTINVQDSTLEPHLTAPQDAQINEVKDDVVPTEKRKRDDADGNDNDEADGKRSLHPMWKTSICSYFRKHATCHHGDACRYAHSEEELRPRPDNTWDPTSERGKKKALKSVTGEKLNVTDGVMMTELVDEVDGEGGDDGFASNQALSKCLVHLPMKWSSENLRNFLNEQGIPFKHAKTKKGMAIGFVTFENEEQMKSSSKDLLGKQIGNKKLEVADVIPRSFEKKSNSNVSSNGTCGAETNDDNLANDGSESKARSSREAVTPLAHMSYADQLEQKKYSLMQILKKLVSHYCFYFTIVVLIFLWPLISHISAGGLPCNLEGIIESPIVNGYRNKCEFSVGYSMEGKATVGFSLGNFREGVTAVEEAVDCPNISTIACKYAAIFQEFLQHTNFPVWNRFKNCGFWRQLTVREGRSNGNVADAETFDGIAEVMIIVQVSTASFDDALVAAEFKRLAESFVTGATSHCPTLPLTALVVQDHQGISNVAPSDAPLHSLPIAVGDPERDENISAADVRIHDYISNLQFSISPTSFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGAIGLTLAHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCKFICAKAEQVMGSLLKEYLNVPKEQVDDPNISASVNDMPEDSACPEPGNGEKASNSSENNNSGVENEVPKDSTSENENTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHTHLRRLVYISCNPESLVANAIELCTPSPAEIEKGNKDNRGWRRMSSAGLARHRAKSMPISEAFKPIKAMAVDLFPHTQHCELVMLLER 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03492 812 Pfam Methyltransferase domain 569 628 IPR025714 -
Car06g03492 812 CDD AdoMet_MTases 571 655 - -
Car06g03492 812 Pfam tRNA (Uracil-5-)-methyltransferase 695 747 IPR010280 GO:0006396|GO:0008173
Car06g03492 812 SUPERFAMILY CCCH zinc finger 68 102 IPR036855 GO:0046872
Car06g03492 812 MobiDBLite consensus disorder prediction 20 66 - -
Car06g03492 812 ProSiteProfiles Zinc finger C3H1-type profile. 70 98 IPR000571 GO:0046872
Car06g03492 812 MobiDBLite consensus disorder prediction 664 694 - -
Car06g03492 812 Gene3D - 64 103 - -
Car06g03492 812 ProSitePatterns RNA methyltransferase trmA family signature 1. 707 739 IPR030390 -
Car06g03492 812 CDD RRM_SF 161 226 - -
Car06g03492 812 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 71 97 IPR000571 GO:0046872
Car06g03492 812 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 274 812 IPR029063 -
Car06g03492 812 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 272 812 IPR010280 GO:0006396|GO:0008173
Car06g03492 812 SUPERFAMILY RNA-binding domain, RBD 164 237 IPR035979 GO:0003676
Car06g03492 812 MobiDBLite consensus disorder prediction 236 257 - -
Car06g03492 812 MobiDBLite consensus disorder prediction 643 694 - -
Car06g03492 812 Gene3D Vaccinia Virus protein VP39 512 811 IPR029063 -
Car06g03492 812 MobiDBLite consensus disorder prediction 236 269 - -
Car06g03492 812 MobiDBLite consensus disorder prediction 39 66 - -
Car06g03492 812 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 85 812 IPR045850 -
Car06g03492 812 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 85 812 - -
Car06g03492 812 MobiDBLite consensus disorder prediction 94 123 - -
Car06g03492 812 SMART c3hfinal6 70 97 IPR000571 GO:0046872
Car06g03492 812 Gene3D - 161 230 IPR012677 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car06g03492 tRNA_U5-meth_tr 1.3e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03492 K15332 - tcc:18590864 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03492 06 65817814 65823949 Car06g03492 06 65817814 65823949 ECH