Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03491 ATGAGTTTTGAAGAAAAAAATCATGTAACTCAGGAACCTGATGATGTTTCTTGCAGAATAGCAGTTTCTCTTCCTGTTGCTCACAAGGATGATGATCCAATGGGGATAACTGAAGAAACTGCGCATGTTCCGCCTCGGAAGAAACAAAATCTTCTCCTTGAAATACCCTCAAGAACACCAGAAGAGTGTTCTCAAGATTTTGTTTCAATCAAAATGCCAATGACACCAAGTCCGACTCCTACTCCCAAAAGAGTGAATTTTCTGGTGAGTTCTCACAGTGTTGACGCACCGATAAATAATTCACCTAGATCTGCAACATCAAAAGGCAAATCATCGATAAGAAACATCCTACCAAAATTGAGCTTCAGGTATAGGACACCAGCAGATATTGAAAAGGCTAATACACCAACTCCAGAAGTTTCGTCTTTGGGCCCTCGAGAAAAGCCTTTAATCTCTAGATCATTGTCCCTTAGTAAGATATTTACTCCTCGGATTAAAAGAACTTCATCATTGCCAGTAGAACATATTGGAATTTCAAACACAGAATCCACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTCTGAGTAAAAAAGAGACTCGGCGAAAGATAGCGCGCTCTCTCTCAGTGCCTACCAACAACAAGGACAAAAGCCTAAGGAGGATGAATTCATTTTTTCGTGTCGTTCCTTCTACTCCTCGAGTAAAGGAAATAAATGAATTGTTGAGTGCGTCTCCAACGAAGGATACTGAAAATGAAGATGCTGATGACGGTGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGAACTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGTAGTTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACTTGTGATGTCTGCAAGGAGGATGTGAAAAACCTTCCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGATTAGTGGAGCAAGTAGATCTCCACTTGAAGATGTAAACGGGGTTTGGCAGGAAGTTCCAGTGCTTGTCATTGTCAGCATGTTGGCCTACTTTTGTTTTCTTGAGCAACTGTTGGTTGCAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTTCTTGGTCTGCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTATGGTGGTTCTATTCGCACATATATTTTACTCCTTGGTTCACGTGCAAGCAGTTCTTTCAGTCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGAGCGGAAGTTCTATCCTTGTGGAGTTCTTTAGATGGAGAAGAAGATCGCAGGCTCTTCAAGAGCAGCAACATGGCCCTCAACTGATGACACAAGCAGGACAACAACCTCAAACTGTAAACACGCCACGCTCGGACACATCCAACCGCAGTCATCCGGTGGTGCAAGATCTACAAAACTCAAATCAGAGCTAA 1548 0.4244 MSFEEKNHVTQEPDDVSCRIAVSLPVAHKDDDPMGITEETAHVPPRKKQNLLLEIPSRTPEECSQDFVSIKMPMTPSPTPTPKRVNFLVSSHSVDAPINNSPRSATSKGKSSIRNILPKLSFRYRTPADIEKANTPTPEVSSLGPREKPLISRSLSLSKIFTPRIKRTSSLPVEHIGISNTESTHGGNGSVGGPLSKKETRRKIARSLSVPTNNKDKSLRRMNSFFRVVPSTPRVKEINELLSASPTKDTENEDADDGGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEDVKNLPVTLLRIQSVRNRISGASRSPLEDVNGVWQEVPVLVIVSMLAYFCFLEQLLVAKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFAMVVLFAHIFYSLVHVQAVLSVLLATFAGFGVVMSGSSILVEFFRWRRRSQALQEQQHGPQLMTQAGQQPQTVNTPRSDTSNRSHPVVQDLQNSNQS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03491 515 ProSiteProfiles Zinc finger RING-CH-type profile. 261 323 IPR011016 GO:0008270
Car06g03491 515 Pfam RING-variant domain 269 316 IPR011016 GO:0008270
Car06g03491 515 MobiDBLite consensus disorder prediction 475 515 - -
Car06g03491 515 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 35 489 - -
Car06g03491 515 CDD RING_CH-C4HC3_MARCH 269 317 - -
Car06g03491 515 PANTHER OS02G0165000 PROTEIN 35 489 - -
Car06g03491 515 MobiDBLite consensus disorder prediction 178 202 - -
Car06g03491 515 SMART ringv_2 268 317 IPR011016 GO:0008270
Car06g03491 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 324 IPR013083 -
Car06g03491 515 SUPERFAMILY RING/U-box 265 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03491 Car-Chr6 65801410 65805926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03491 266 323 C3H Transcription Factor Family AT2G37950 47.458 2.05e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03491 - - gmx:100788108 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03491 06 65801410 65805926 Car06g03491 06 65801410 65805926 ECH
Car01g02492 01 50626973 50632101 Car06g03491 06 65801410 65805926 PCT