Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03483 ATGAACACTGACGGCCGGAAGTGGGACCGTCGAGATAACAGAATATCCAAAAAGCAAAAACTTATCCGCAGCGCCGAAGAAGAACTCGAAGTAAAGTTAGGGTTTGATCTTTTCTCAGAAGGACAAAAGCGACTTGGATGGTTACTCACTTTCTCATCATCGTCTTATGAGGACGAGGATACACGTAAAGCATACAGTTGCGTTGATCTTTACTTTGTCACACAGGATGGGTCCTCATTCAAGACAAAATACAGATTTCGCCCTTATTTCTATGTAGCTACAAAGAATAAAATGGAGATGGATGTTGACGCATACCTGAGACGACGTTACGAAAGCCAAGTTGCAGATATTAAAATTGTTGAAAAGGAAGACCTGGATCTTAAAAACCACTTGTCTGGATTGACAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAACTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAAGCAAAGTCTGATGCTGCAGAAGCCTATGAGTCTATATTAACAGGGAGAAGAGAACAAAAACCTCAAGATTTTCTAGATTGCATAATTGATCTTCGCGAATATGACGTTCCTTACCATGTTCGCTTTGCTATTGACAATGATATACGGAGCGGCCAGTGGTATGATGTCGGAGTGTCCAACGATGGGGTTACACTTGAGAAGAGGACAGATCTTCTACAGCGTGCTGAAGTTCGTGTTTGTGCATTTGATATCGAAACCACAAAACTTCCATTAAAGTTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCGTATATGGTAGACGGGCAAGGGTATTTAATCATAAACAGAGAGTGTGTTGGGGATGATATAGAGGATCTAGAGTACACTCCAAAACCTGAGTTTGAAGGGTATTTTAAGGTGACAAATGTTCAGAATGAGATTGAGCTCCTTAGATTTTGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATATATGTGACTTATAATGGTGATTTCTTTGATTGGCCATTCCTGGAACGACGGGCAGCTCATCATGGGTTCAAAATGAGTGATGAAATTGGGTTTCAATGTGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTCCCCATTTAGATTGTTTTGCTTGGGTTAAACGTGACAGTTATCTCCCTCAGGGGAGCCAAGGCCTAAAGGCTGTAACAAAAGCAAAGTTGGGTTATGATCCAAAAGAGGTGAACCCTGAGGACATGGTACGTTATGCAAAGGAAAAGCCTCAGACGATGGCTTCCTATTCTGTTTCTGATGCAGTGTCCACTTATTACCTATATAAAACTTATGTTCATCCCTTTATTTTCTCTCTTGCCACTATAATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGCGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGGCATACAAGGCTAATGTTATCTGCCCTAACAAGCACCAATCTGATCCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTACATAGGCGGGCACGTTGAATGCCTAGAAACTGGTGTATTTAGATCTGATATTCCATGTAGTTTTACACTTGAGCCATCTGGTTTTGAGCAATTAATCAACAACCTTGATCGAGATTTACAATATGCTATTAAAGAAGAGGGTAAGATGGATTTGAAATCTGTCTCAAATTATGATGAAGTGAAGAATGCTATCACGGAAAAGCTTGTAAAATTACGAGATGCGCCGATACGTGATGAATGCCCCCTTATTTATCATCTGGATGTAGCTGCAATGTATCCAAACATAATTTTAACCAACCGACTTCAGCCTCCATCAATTGTTACGGATGAGATTTGCACTGCATGTGACTTTAACCGTCCTGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGTGGAGAAACATTCACGGGAAAGAAAAGTGACTATTATCATCTAAAGAAGCAAATTGAGTCAGAGTTTGTAGATGGGGTGAATGAAAGGTCATCAAAATCTTTTCTTGACCTGCCCAAGGCAGAGCAACAATCAAGACTAAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCATATAAACGGGTACTTGACAAACCAGTTACCGAACTCCGTGAAGCTGGAATCTGCATGCGGGAAAATCCATTTTATGTTGACACTGTTCGCAGtttccgggataggagatacgaatataaaggccttaacaaggtttggaagggaaaactatcagaggccaaggccagtggaaattctttaaagatccaggaagcacaaGACATGGTAGTGCTTTATGATTCGTTGCAACTTGCTCACAAGTGTATTCTTAATTCCTTTTATGGATATGTAATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGTGTTGTCACATATACTGGTGCAAAAATAATTCAGAATGCTCGCTTGTTGGTAGAGAAAATAGGAAAACCACTTGAACTAGACACAGATGGTATCTGGTGTGCTCTTCCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAATAGACTCAAAAAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATACATAATACAAATGATCAGTATCAGACACTCGTTCAAAATGAGAAAAATCCGAATGAGAGAACTTATAAAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGACGGACCATACAAGGCAATGATTATTCCTACTTCCAAGGAGGAAGGAGTTTTAATTAAGAAGCGATATGCTGTTTTTAACGATGATGGAACCCTTGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTCAGCTTTTTGACAAGTTTCTGCTTGGCTCAACCTTAAAGGAATGCTATTCAGAGGTTGCTAAAGTGGCAAACCACTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTGCAGACAGTGAATTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTCAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGGCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGCTGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTTGCAAATCCTGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGCGAGAAGGAAGACAAGTTTCGCCAAAGAAAAATTGATGATACATTTAAGTCAATGAACAAGAATGAGTACTCAAAAAAGCATAATGATTCTAATGTTACGGTTGATGAGACTGTTAATGACTTGGAGGACTTTGGAAATAGGGGCAAGATTTCTACATGTGGACCTAGACCAATTATACGGCATTATGAAGCTAACAACGAGCAACCTCCGGTGAAGGTCAATGGTCAGGAAGATTCAGAGCCACAAGATATTGACAGTAGGCACATGGATCAACCACTTTCACTGTCCCAAGAAAATCAAATATCATGTGAAAATGTTGACAGAACTGTAGATTATCAAGGATGGCTTCAAATAAAAAAGAGAAAGTGGAAAGATATGCTGGGAAGGAGAAAGAAGCAAAGATTGGAGAGTTCAAAGAAATCTGACCATTTAAATGGAAATCTTGAACAAATCAATGGTAATATGAATCAAGGCAGAAGTAATGTCAGTTCATATTTTAGAAGGCACGAGGTAGTCCTAACACGGTGCCACTGGCAGATAATACAGCTAGTCCACAGTTCACAAGTTGGCCAGTTTTTTGCTTGGGTTGTTGTTGATGGGGTTATGCTCAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTTAACTCTAAATCACCAACTGAAGAATTTTCATGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGTTATAACCTGTATGAGGTCACAATTAATGAAGTACAATATAGAGAAGAAAGCAAAAAACTTGCTGCCCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACGAAGGGGCCACTGGAGTTCAACACTATAGTCCAGCTTGGTTGTGTTTGTAAGGTAGATAAAACTGCTAAGAAACGTAGCTTACAAGAGCCATGGAAGTTGAGTGAATTGCACATGAAAACCACAACAGAATGTGCTTATCTTGAACAATCAATATCCTTTTTTTACTTATACCATAGCATCTCAGAGGGACGGGCTATATATGTTGGATATTTTCCTGGGTCACAAGCAATAAACTTTGTGGTAGTTAATCCCTACCAAAACAAGGACTTATCACCAATTTTTCTTGAAAGGCAATTTCGCGATGCTTGCAGAGCTTTGTCTATTGAGCCACCTCCGATGAATGGCATTAATTTTAAAGTGGAATATGTTGCACTTGTCAAAGATGCTGAAACAGTACTGCAAAGCGCAATAAATGACCACAGGAGTGAACATCATGGGCCGATGGTCGCTGTCATTGAATGCCCAGATGTTCAACTATTAAAACTGGGTATTCGAGCTCTAGATGATTTTCCATGCTTGAGTATTCCTTCCAATGCACGTGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCTAAACTTGGAATGCAACGATGTGCAGCATCAGTCCAGTGGCTAAATGAAAGAATTGCTCTATCAAGATATGCCCATGTACCACTCGGGAACTTTGAATTTGACTGGCTTATATTTACAGTCGATACCTTCTTTTCTAGAGCATTGCGTGATAATCAACAGGTACTTTGGATATCTGATGACGGTTTTCCAGATTTGGGTGGCAACAACGGTGAAGAGAACTGTTTTTTGGACGAGGTCCGCCAACCTGTTTGTACGTTTCCTGGAGCTTATAGAAAAGTTACAGTGGAGCTAAAGATACACCACCTGGCTGTAGATGCCCTTCTAAAATGCAACCAAGTTAATGAAATGGAAGGAGGTGCTTTGCTAGGATTTGATGATGGATTCGATGCTGAAGCATTTCCCGTGATTGGTCAGAATGGCTTTGATGAGTCTACTTCATGTGCACATGCCTTTCGAGCCCTAAAACATTTGATCCAGCGGTGCCTTGCAGATGCAGTCACTTCTGGAAATGTTTTTGCTGATGCAATATTGCAACATCTGTATAGATGGCTTTGCAGCCCTCAATCAAAACTTCATGATCCTGCTCTTCACCGGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATTATTATAGACACGGGGAAATATGATCTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAGAACTATACAATCTAGAGACCTATTCGAATGGGTTGAGCTTGAACCACTGCAGTTCTGGTGCTCATTGCTATTCATGGATCAGTATAACTACGGTGGAATACCAGCAAAAGCTGATGAAGCAATGGATGATGATTCTGAAGTTGATATAATATCAAGCTGGAATATTGCCGAATACTTGCCGAAAAAAATCCAGGACCATTATGTATTCATTGTTTCACAATTCATGTATATTCCTTGGAACTATGCACGAATAGAAGCAGCAAACAGGGCTTCGGCGCGGAATGGAGACTCCTGCACCCCGTCAATTAATATTAGTGCTGCGGAGGCTTTCGAATCAAAAATAACTGAATATATTAAAGGGCAGATTAGCTCTTACTTCACTGAAAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGATGGGCAGATCAGAAGCTGACCAGAGTTCATCATCTGGCCTTCCCCAGCTTATGGATGATCTCCATAAAGGGGATGCAGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTCCATGTCATGAGAAAAAATTTGTTAAAATATGTTCGTGTCAGGGAGTTTGCTCCAGAAGCACAGTTTCGTGATCCTTGTCATTCCTTCATCTTACCCAATGTCATCTGCAGCTATTGTAATGACTGCAGAGATTTGGATTTGTGCCGTGACCCGGCTTTATTGACGGAGGAGTGGCGCTGTGCCGTACCTCAGTGTGGCCAGCCTTATGACCGTCAGGTGATGGAGAATGCTCTTCTTCAAATTGCACGACAAAGGGAGCGGCTTTACCACTTGCAAGATCTGGTGTGTGTCAGGTGCAACCAGGTGAAAGCTGCCCATTTGGCCGAGCAATGTGCATGTGCAGGCTCATTTAAGTGCAAAGAAGATGTAAGGGAATTTCGCTCAAAGATGCAAGTTATCTTGAACATAGCTACCCGACAGAAATTCCAACTTCTCCAAGAGGTTACCTCCTGGATATTAGAACTTAAAATTTAA 6531 0.4025 MNTDGRKWDRRDNRISKKQKLIRSAEEELEVKLGFDLFSEGQKRLGWLLTFSSSSYEDEDTRKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQVADIKIVEKEDLDLKNHLSGLTKSYLKLSFDTVQQLMNVKSDLMHVVERNKAKSDAAEAYESILTGRREQKPQDFLDCIIDLREYDVPYHVRFAIDNDIRSGQWYDVGVSNDGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLVMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGYFKVTNVQNEIELLRFWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGFKMSDEIGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPKEVNPEDMVRYAKEKPQTMASYSVSDAVSTYYLYKTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLETGVFRSDIPCSFTLEPSGFEQLINNLDRDLQYAIKEEGKMDLKSVSNYDEVKNAITEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFTGKKSDYYHLKKQIESEFVDGVNERSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSLKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAIHNTNDQYQTLVQNEKNPNERTYKTHSECSIEFEVDGPYKAMIIPTSKEEGVLIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAQLFDKFLLGSTLKECYSEVAKVANHWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMNKNEYSKKHNDSNVTVDETVNDLEDFGNRGKISTCGPRPIIRHYEANNEQPPVKVNGQEDSEPQDIDSRHMDQPLSLSQENQISCENVDRTVDYQGWLQIKKRKWKDMLGRRKKQRLESSKKSDHLNGNLEQINGNMNQGRSNVSSYFRRHEVVLTRCHWQIIQLVHSSQVGQFFAWVVVDGVMLKIPVSVPRVFYLNSKSPTEEFSCKRVNKTLPHGRHSYNLYEVTINEVQYREESKKLAALLADPDVEGIYETKGPLEFNTIVQLGCVCKVDKTAKKRSLQEPWKLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPGSQAINFVVVNPYQNKDLSPIFLERQFRDACRALSIEPPPMNGINFKVEYVALVKDAETVLQSAINDHRSEHHGPMVAVIECPDVQLLKLGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLNERIALSRYAHVPLGNFEFDWLIFTVDTFFSRALRDNQQVLWISDDGFPDLGGNNGEENCFLDEVRQPVCTFPGAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGFDDGFDAEAFPVIGQNGFDESTSCAHAFRALKHLIQRCLADAVTSGNVFADAILQHLYRWLCSPQSKLHDPALHRLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLRTIQSRDLFEWVELEPLQFWCSLLFMDQYNYGGIPAKADEAMDDDSEVDIISSWNIAEYLPKKIQDHYVFIVSQFMYIPWNYARIEAANRASARNGDSCTPSINISAAEAFESKITEYIKGQISSYFTEKLLGVVRDIVLHMKGMGRSEADQSSSSGLPQLMDDLHKGDAALEFIKHVCAVLALDQSVQHDVHVMRKNLLKYVRVREFAPEAQFRDPCHSFILPNVICSYCNDCRDLDLCRDPALLTEEWRCAVPQCGQPYDRQVMENALLQIARQRERLYHLQDLVCVRCNQVKAAHLAEQCACAGSFKCKEDVREFRSKMQVILNIATRQKFQLLQEVTSWILELKI 2176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03483 2176 CDD DNA_polB_epsilon_exo 240 444 - -
Car06g03483 2176 Pfam Domain of unknown function (DUF1744) 1496 1861 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Car06g03483 2176 Gene3D - 945 1122 IPR042087 -
Car06g03483 2176 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 33 2172 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Car06g03483 2176 Gene3D Palm domain of DNA polymerase 754 941 IPR023211 -
Car06g03483 2176 SUPERFAMILY DNA/RNA polymerases 486 1075 IPR043502 -
Car06g03483 2176 CDD POLBc_epsilon 503 1096 - -
Car06g03483 2176 Gene3D - 238 468 IPR036397 GO:0003676
Car06g03483 2176 SUPERFAMILY Ribonuclease H-like 58 467 IPR012337 -
Car06g03483 2176 Gene3D DNA Polymerase, chain B, domain 1 52 226 - -
Car06g03483 2176 MobiDBLite consensus disorder prediction 1238 1252 - -
Car06g03483 2176 SMART DUF1744_2 1477 1861 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Car06g03483 2176 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car06g03483 2176 Pfam DNA polymerase family B 755 1069 IPR006134 GO:0000166|GO:0003677
Car06g03483 2176 MobiDBLite consensus disorder prediction 1238 1263 - -
Car06g03483 2176 MobiDBLite consensus disorder prediction 1172 1196 - -
Car06g03483 2176 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03483 5 2172 Core DNA Replication Machinery Family AT2G27120 66.621 0.0 2947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03483 K02324 - gmx:100812003 3690.97