Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03480 ATGGCTATGGCTGTGGCTCAGCATAGAGAAAGTAGTAGTAGTGGTGGAAGCATTGATAAGCATCTTGATTCTGGGAAATATGTGAGGTACACTTCTGAACAAGTTGAAGCTTTGGAAAGGGTTTATTCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCAAAACAAATCAAGGTTTGGTTTCAGAATCGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCAAGGCTTCAAACTGTGAACAGGAAACTTTCAGCAATGAACAAGTTGTTGATGGAGGAAAATGATCGGTTGCAGAAACAAGTTTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAACAACTGCATACTCCATCAGCAGCAACTACTGATGCAAGTTGTGATTCGGTGGTTACTACTCCTCAGAATTCAAAGAGAGATGCTAATAATCCTGCTGGACTCCTATCAATTGCGGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCTTGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTTTGTCTTGGTTTCGTGAGTGTCGGAACCTAGAAGTTTTCACAATGTTTTCTGCTGGAAATGGAGGAACCATTGAGCTTGTTTACACACAGACATATGCTCCAACGACGCTGGCTCCTGCCCGAGATTTCTGGACTCTAAGATACACTATTACTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGATCCCTGTCTGGTACAGGCACTGGCCCTAATTCAGCTTCCGCCGCTCAGTTTGTAAGGGCTGATATGCTCCCTAGTGGCTACTTGATTCGACCGTGTGATGGTGGAGGGTCAATCATCCACATTGTAGACCACTTAAATCTTGAGCCGTGGAGTGTACCAGAAGTTCTACGACCACTTTACGAATCACCGAAGGTGGTGGCTCAAAAAATGACTATTGCGGCGCTTCGATATATTAGGCAAATAGCTCAGGAATCAAGTGGTGAAGTGACATATGGATTGGGTAGGCAGCCTGCTGTTTTGCGAACATTCAGCCAAAGATTGAGCAGAGGCTTCAATGACGCTGTAAATGGATTCAATGACGATGGTTGGTCTATACTGAACTGTGATGGCGCTGAGGATGTAATTATTGCTGTTAATTCAACAAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCACTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTCCAAAATGTTCCTCCTGCAGTTTTGGTTCGCTTTCTAAGAGAGCACCGTTCAGAATGGGCTGATTTCAACGTTGATGCTTATTCTGCTGCGTCACTGAAAGCGGGAAACTATGCCTATCCAGGGATGAGGCCTACAAGATTCACCGGAAATCAAATAATCATGCCTCTCGGCCATACAATTGAACACGAAGAGATGCTTGAAGTTATTAGGCTGGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTCGGGACATTCATCTCTTACAGATATGTAGTGGAACTGATGAAAATGCTGTCGGGACTTGCTCTGAGCTCATATTCGCTCCAATTGACGAAATGTTCCCAGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATCATCCCGTTGGATTCAAAACCAGGTGATAAAAAGGATGCAGTGAATTCAAACCGGACACTGGATTTGGCATCAGGTATTGACATGAGCCCAGCAACAACTCACGGTGGTGTGGATTCATCGGCAAGTCAAAACACCCGATCGGTGTTGACTATTGCCTTTCAATTCCCTTTCGACAGCAGTATGCAAGAAAATGTTGCAATCATGGCACGTCAATATGTCCGTAGTGTGATTTCCTCTGTGCAGAGAGTTGCAATGGTTATATCTCCATCCGGTCTAAACCCAGCTGTTGGTGCAAAACTTTCGTCTGGTTCTCCGGAAGCGGTTACACTAGCTCACTGGATCTGCCAGAGTTATAGTTACTATTTGGGGACAGACTTACTGAGATCAGATTCTCTTGTTGGTGACTTGATGCTGAAACAGCTATGGCATCACCCGGATGCTATTCTATGTTGTTCACTGAAGTCTCAGCCTGTGTTCGTCTTTGCAAATCAAGCCGGCCTTGACATGTTGGAAACAACTCTAGTGACTTTGCAAGACATCACATTGGATAAAATATTCGACGAGTCCGGTCGCAAAGCATTGTGCTCAGATTTTGCCAAGTTAATGCAACTGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCGACGATGGCGCGGCATGTTTCTTACGAACAAGCGATTGCATGGAAAGTGCTTACAGCAGAAGATAACAGTGTTCATTGCTTAGCTTTTTCTTTCATAAATTGGTCATTTGTATGA 2535 0.4462 MAMAVAQHRESSSSGGSIDKHLDSGKYVRYTSEQVEALERVYSECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTPSAATTDASCDSVVTTPQNSKRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFRECRNLEVFTMFSAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTITLDNGSLVVCERSLSGTGTGPNSASAAQFVRADMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQESSGEVTYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSILNCDGAEDVIIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGNYAYPGMRPTRFTGNQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAVNSNRTLDLASGIDMSPATTHGGVDSSASQNTRSVLTIAFQFPFDSSMQENVAIMARQYVRSVISSVQRVAMVISPSGLNPAVGAKLSSGSPEAVTLAHWICQSYSYYLGTDLLRSDSLVGDLMLKQLWHHPDAILCCSLKSQPVFVFANQAGLDMLETTLVTLQDITLDKIFDESGRKALCSDFAKLMQLGFAYLPAGICMSTMARHVSYEQAIAWKVLTAEDNSVHCLAFSFINWSFV 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03480 844 Coils Coil 91 122 - -
Car06g03480 844 CDD homeodomain 26 86 IPR001356 GO:0003677
Car06g03480 844 MobiDBLite consensus disorder prediction 132 158 - -
Car06g03480 844 Pfam Homeodomain 26 84 IPR001356 GO:0003677
Car06g03480 844 Gene3D - 199 382 IPR023393 -
Car06g03480 844 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677
Car06g03480 844 SMART START_1 164 374 IPR002913 GO:0008289
Car06g03480 844 CDD bZIP 78 117 - -
Car06g03480 844 CDD START_ArGLABRA2_like 159 375 - -
Car06g03480 844 Gene3D - 19 92 - -
Car06g03480 844 SMART HOX_1 23 89 IPR001356 GO:0003677
Car06g03480 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 844 - -
Car06g03480 844 Pfam START domain 165 372 IPR002913 GO:0008289
Car06g03480 844 SUPERFAMILY Bet v1-like 164 376 - -
Car06g03480 844 SUPERFAMILY Homeodomain-like 25 88 IPR009057 -
Car06g03480 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 844 IPR044830 GO:0003700
Car06g03480 844 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Car06g03480 844 MobiDBLite consensus disorder prediction 1 22 - -
Car06g03480 844 Pfam MEKHLA domain 700 843 IPR013978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03480 Car-Chr6 65580241 65585863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03480 1 844 Homeobox Transcription Factor Family AT5G60690 80.471 0.0 1422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car06g03480 START 9.9e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03480 K09338 - gmx:100804870 1560.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03480 06 65580241 65585863 Car06g03480 06 65580241 65585863 ECH
Car06g03480 06 65580241 65585863 Car01g02502 01 50719996 50726872 ECH