Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03473 ATGAAGGAAAGTGAGAAAGGGTATTTGGATCCACAACTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATACCTCAAGTGAACTCCAAAGTTTTCTACTTTCCACAAGGTCATGCTGAACATGCCAACACAAACATTGATCTGAGGGTTTCAATTTCATCACTCATACTTTGCAAAGTTGTTGCTGTTAAATTCATGGCTGACCCAGAAACAGATGAAGTATTTGCTATCATAAAGCTTCTTCCTTTAAGAAATTCAGAGCTTGTTTATGATGAAGAAAGTGGTGTTGGtggtttggaaaattctgaaaagcctgcatcttttgcaaagactttgactcaatctgatGCAAACAATGGTGGAGGTTTTTCTGTTCCAAGATACTGTGCTGAAACAATCTTTCCAAGGTTGGATTACTCGGCTGAACCACCTGTTCAGACAGTCGTGGCGAAGGATGTTCATGGCGAGTTTTGGAAGTTTAGGCATATATATAGAGGTACACCACGTAGGCACTTGCTTACAACTGGGTGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTTGTGTTTCTGAGGGCTGAGAATGGCGAATTGTGTGTCGGAATTCGAAGGGCGAAAAAGGGAATTGGTTCTGGTTTTGAAGGTTCATCTTGTGGTGGTTGGACTTCAGGTTGTTCTAACAACGGAAACTGTGGAATTGGACCTTTTGGGGCATTTTCTTTTTTCTTGAGAGAGGAGAATAAGACATTGAGAAATGGTTTTGTTGGTGTTGATAATGATTTGAGTGGAAGAGTTAGAGTGAGGCCTGAAGATGTTATGGAAGCTATGAAATTGGCTTCTAATAACCAACCATTTGAAGTTGTTTACTATCCAAGAGCAAGCACTCCTGAGTTTTGTGTTAAGGCTTCAGCTGTTAGAGCTGCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCTTCTAGGATTAGTTGGTTCATGGGAACTATTGCTTCTGTTCAAGTTGTTGATCCTATTCGCTGGCCTAATTCGCCCTGGCGCCTTCTTCAGGTAACATGGGACGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACATACCAGTCATTCATTTCACACCTTTCACTCCACCGAGGAAGAAGCTTCGGATTCCGCAACATCCGGACTTCCCCCTCGACGTTCAATTTCCATCACCGACGTTTTCAGGCAACCAGCTCGGGCTAAACATCCCCTTGAGTGGTTTATCTGATAATGCTCCTGCAAGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAGGAATATCTCTTTCGGATTTCAACCTTAACAATAAACTACAATTAGGGTCGTTCCATACTAATATGCACCATCTTGATATGCATAATAGGATTTCAAATGACAACAATATGATCAACAATGATAACAACAAAGAAAGCTTATCATGCTTGTTGACCATAGGGAAAAAACCTGATAAGAGTTTGGAGAAATCTCAATCTGATGATGTTGTCGTTGTTAAGAAACATCAGTTTTGTCTTTTTGGTCAACCGATACTCACCGAGCAACAAATTTCTAGAAACTGTTCTAAAGATTTATTGTCTCATAATGAAAAAAATTCAGTAGATGAGAATAAGCACAAAGAGAAGTGCTTTTTTGATGTATTTTCCCCAGGTAAAACTTCTGCTGCTGCTGAGTTTAGTTGGCAACTTGGCTTGGATATTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCCTTGATTTATCACTTCTTGGTTCTTATGAAGAGCTCTATAAGAAACTTGCCAACATGTTTGATTTAGAAAAATCTGAGATGTTGAATCATGTGTTCTACCGTGATGCAACAGGTGCTGTTAAACAAACCGGAGAAGAACCCTTCAGTGACTTTATGAAGACAGCAAAAAGGTTGACTATTCTGACAGATTCTGGGAGCAAAAATGTTAGAGGGGCATGGATTACAGGAACTCTCAAAAGTGAACATGGATTGGATGCATCAAACAAAACAGGTCCTCTAAGCATATTTGCTTAA 2121 0.397 MKESEKGYLDPQLWHACAGGMVQIPQVNSKVFYFPQGHAEHANTNIDLRVSISSLILCKVVAVKFMADPETDEVFAIIKLLPLRNSELVYDEESGVGGLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGEFWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGSGFEGSSCGGWTSGCSNNGNCGIGPFGAFSFFLREENKTLRNGFVGVDNDLSGRVRVRPEDVMEAMKLASNNQPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPVIHFTPFTPPRKKLRIPQHPDFPLDVQFPSPTFSGNQLGLNIPLSGLSDNAPASIQGARHAQFGGGISLSDFNLNNKLQLGSFHTNMHHLDMHNRISNDNNMINNDNNKESLSCLLTIGKKPDKSLEKSQSDDVVVVKKHQFCLFGQPILTEQQISRNCSKDLLSHNEKNSVDENKHKEKCFFDVFSPGKTSAAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEELYKKLANMFDLEKSEMLNHVFYRDATGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNVRGAWITGTLKSEHGLDASNKTGPLSIFA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03473 706 Gene3D - 594 679 - -
Car06g03473 706 ProSiteProfiles B3 DNA-binding domain profile. 108 210 IPR003340 GO:0003677
Car06g03473 706 CDD B3_DNA 107 208 IPR003340 GO:0003677
Car06g03473 706 Gene3D - 106 210 IPR015300 -
Car06g03473 706 Pfam B3 DNA binding domain 108 209 IPR003340 GO:0003677
Car06g03473 706 PANTHER AUXIN RESPONSE FACTOR 2 683 - -
Car06g03473 706 SUPERFAMILY DNA-binding pseudobarrel domain 102 209 IPR015300 -
Car06g03473 706 SMART B3_2 108 210 IPR003340 GO:0003677
Car06g03473 706 ProSiteProfiles PB1 domain profile. 594 674 IPR000270 GO:0005515
Car06g03473 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 683 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car06g03473 706 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car06g03473 706 Gene3D - 317 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03473 Car-Chr6 65262709 65267058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03473 4 678 B3 DNA Binding Superfamily AT4G30080 57.349 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car06g03473 B3 3.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03473 - - lja:Lj0g3v0141269.1 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03473 06 65262709 65267058 Car06g03473 06 65262709 65267058 ECH
Car06g03473 06 65262709 65267058 Car01g02504 01 50745831 50749544 ECH
Car04g01863 04 20016320 20019820 Car06g03473 06 65262709 65267058 ECH
Car01g02504 01 50745831 50749544 Car06g03473 06 65262709 65267058 PCT