Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03472 ATGAAGACCAATTGGTTTTTTGACCAGAATTTTAATGGTGTGTCGGAGGATATTCTTGAAGATGTCATTGAGTTTTTTGATTTTCGACTTGATGATGTGGAACTAACTGATGTTGTTGAAGAAGATTGGAATGCTCAATTCAAACACCTTGAAGAGCCATCTCTTGGTGTTTTTTCAGTACCATCTTCTGGGTTGTGTGGCGAAATCGAAACTCAAAATGAGAAACCGAAACTTGGGAAGAGTTTCTCTGCTGCTGAACTTTCTCATATTGATGGAAGAAATATTGTTAATTCAAGCTTAAAAGATCGACAAGTACTTCTAGCTAAGACTGCTGGACCTGCATATGGAAAAACTATTCCCATTCAAAATGTCTCTTTCAACGGAAAAGATCTGCGCCGATGCCAAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTTATTCCTCGGTTGATAATTTCAACTTTGAATTACCAGTGATCCCAGCAAAGCGTCCTCGCAGTAAATGTCGCCGGCGTCTCTCAACCTTTGACAAGCTCTTCTCAATTCCATTCATCTCTACTCCACCCGCTTTTCGTAAACGTCAAAGGCTAGCTGCTTCTGAATCGGTATGCCGAGTCCAAAGAAAGCAGCGGAAAACGGATAGTATTCGGATGAAATCACAGGAATCAGTTGCTCCAAGAAAATGCATGCATTGCGAGGTGACAGAGACACCGCAATGGAGAGAGGGACCTAAGGGTCCTAAGACACTATGCAATGCTTGTGGAGTTCGATACAGGTCCGGTCGTCTATTTCCTGAATACAGGCCTGCAGCTAGCCCCACATTTGAAGCATCATCGCACTCAAATTCTCACAAGAAGGTCTTAGAAATGAGGAACAAGGCCAGCCAGGAGACTTTTAAAGGTTCTTCCATGTTGTATTTATCATCAAACCTTCCAGGAAGTTCGGTATGA 954 0.4245 MKTNWFFDQNFNGVSEDILEDVIEFFDFRLDDVELTDVVEEDWNAQFKHLEEPSLGVFSVPSSGLCGEIETQNEKPKLGKSFSAAELSHIDGRNIVNSSLKDRQVLLAKTAGPAYGKTIPIQNVSFNGKDLRRCQTYSPVSVFESSSYSSVDNFNFELPVIPAKRPRSKCRRRLSTFDKLFSIPFISTPPAFRKRQRLAASESVCRVQRKQRKTDSIRMKSQESVAPRKCMHCEVTETPQWREGPKGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASSHSNSHKKVLEMRNKASQETFKGSSMLYLSSNLPGSSV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03472 317 PANTHER GATA TRANSCRIPTION FACTOR 55 295 - -
Car06g03472 317 ProSitePatterns GATA-type zinc finger domain. 230 255 IPR000679 GO:0006355|GO:0043565
Car06g03472 317 Gene3D - 219 299 IPR013088 GO:0006355|GO:0008270
Car06g03472 317 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 287 - -
Car06g03472 317 CDD ZnF_GATA 229 276 IPR000679 GO:0006355|GO:0043565
Car06g03472 317 Pfam GATA zinc finger 230 263 IPR000679 GO:0006355|GO:0043565
Car06g03472 317 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 55 295 - -
Car06g03472 317 ProSiteProfiles GATA-type zinc finger domain profile. 224 260 IPR000679 GO:0006355|GO:0043565
Car06g03472 317 SMART GATA_3 224 274 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03472 Car-Chr6 65221283 65224841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03472 4 298 C2C2-Gata Transcription Factor Family AT1G08010 37.578 8.81e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car06g03472 GATA 1.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03472 - - mtr:MTR_4g058910 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03472 06 65221283 65224841 Car06g03472 06 65221283 65224841 ECH
Car06g03472 06 65221283 65224841 Car01g02505 01 50763326 50768653 ECH
Car01g02505 01 50763326 50768653 Car06g03472 06 65221283 65224841 PCT