Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03454 ATGAGTAGCTTAAGGCCAGAATTGCATGTAGCTCAGCAAATAAGGCGTGACAAATTGAGGTTTCAGAATCATTTTCAAGACAACAACATGGAACAATTATTATCATTACACCAAGTAGCACAACCAGGGTTCAACTTGGATCTTCTTCAACTTAGAAACAACAACAATAACATGGTTGTtgatgatgatgatgatgatgatgatgaAGCACAAATTTATTCATCTCAAATGATAAATAGTTTCTCAACTTCTCCTCAATATGCTTCATTCCACCATTCATCTTCAAAACAACAACAATCTCATCAAATCTCTGATAATTGGACCATCAATTCTTCTTCTTATAATTATCATCCAAATGAAACAAATTTCTTGCCTTCTCACCTTCATAATCATAGTAATAGTAATAGTTCTTTGCAAGATATTGCAACTTCTTCCATTACTCCCCATTCTTTAATGCAGCATAGCATTTGGGGAGGTGTGAATAGTCATAATGCTACTATTACTACTATGTCTCCATTTCATGAGAATCAAGCAAATCTATGGACAAATAGAGGTGTTGTTGAAAACATGGGAACTTTCTTGAGTGATTGTAACCCTCATCAAGGTTTATCCTTGTCACTTTCATCACAATCAAAATTACCTTCACCTTCTAGTTTTGAACAAGGGTCTTCAAATATGATGAAAACATTGATTCATCAAGAACCAATTATAATAGGAACAACAACATCAAACAGTAGTAATAGTAGTTATAGAAGTGTGGGTCCTCTTGGACCATTTACTGGGTATGCAACAATTTTGAAAAGTTCAAGGTTTTTGAAACCTTGTCAAGAGTTGTTAGAAGAATGTTGTGGATGTCGTCAATCTGGTCCAAAATGGGTTTCTAGAGATGTTGTTGTTGATGATGAAAATGGTGTTTGTGGTAGTAATTCAGGTTCTATGTTGTTGTATGGTTCAAAAGAGAAAGAGAATAGTGTTGCTGATGCTGATGCTGGGAATAGTTTTTGTCTCTCTTCTTCTTCTTCTCGGCCTGAGTGCCAAAAGAATAAGGCTCAATTACTGTTCATGCAACAAGAGGTTAGCAGAAGACACAAGCAATACCATCAACAAATGCAAATGGTTGTTTCATCTTTTGAATCAGTAGCAGGTCTAAGTTCAGCAACACCATACATTTCCTTGGCACTCAAGTCACTATCAAAACACTTTAAATCACTTAAAAATTCGATCACAGATCAACTAAAGATTACATGTCAAGTATTGGGAGAGGACTTTTCAATACTACCACCAACCATAACAAGCAGCAGTAGTAAAATTGACAGTAGCAATAATGTGACAAGGATAAGGTGCATGAACCATAGCATTCAAAAGAATTATTCTGGAGGTAATAGTAATGTTGACTTTGTTGAACCTCAACAACATGTTTGGAGGCCCCAGAGAGGCTTGCCAGAACGTTCTGTGGCAATTCTTAAAGCTTGGTTATTTGAACATTTTCTTCATCCGTACCCCACGGACACGGATAAACACATGTTAGCTACACAAACAGGTCTATCAAGAAACCAGGTATCAAATTGGTTTATAAACGCGCGAGTTCGAGTGTGGAAACCAATGGTGGAAGAAATACACATGCTTGAATCAAAAGGAATAACAGAAAGTGAGAACAATAGTACTAAAAATGAGGCAAGCAGAGGAGTTGGAAGAAATGGAATGGCAGAAAAGGAATTTCAATGTATGGAAATGGGGTCATCATCTTCAACAGGCATTAACAATGTTGAAAATGATAAAGAGCAATGGAACAATATTAAAGAGAAAAGGTCGAAATTGGAAAATGAGATTACAGAAAACATGGATACAACAACAGTGATGGGTGGTTTTATGCCATATCAACGTGGTTCTGTGTCACTGACATTGGGTTTGAGACATGGCGTTGAAAATGTACAACAACAGTTACAGCATGAGGTAGAGCTTAGACATCAATTTGGAGGACATATGATCCATGATTTCGTTGGTTAA 2007 0.3602 MSSLRPELHVAQQIRRDKLRFQNHFQDNNMEQLLSLHQVAQPGFNLDLLQLRNNNNNMVVDDDDDDDDEAQIYSSQMINSFSTSPQYASFHHSSSKQQQSHQISDNWTINSSSYNYHPNETNFLPSHLHNHSNSNSSLQDIATSSITPHSLMQHSIWGGVNSHNATITTMSPFHENQANLWTNRGVVENMGTFLSDCNPHQGLSLSLSSQSKLPSPSSFEQGSSNMMKTLIHQEPIIIGTTTSNSSNSSYRSVGPLGPFTGYATILKSSRFLKPCQELLEECCGCRQSGPKWVSRDVVVDDENGVCGSNSGSMLLYGSKEKENSVADADAGNSFCLSSSSSRPECQKNKAQLLFMQQEVSRRHKQYHQQMQMVVSSFESVAGLSSATPYISLALKSLSKHFKSLKNSITDQLKITCQVLGEDFSILPPTITSSSSKIDSSNNVTRIRCMNHSIQKNYSGGNSNVDFVEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGITESENNSTKNEASRGVGRNGMAEKEFQCMEMGSSSSTGINNVENDKEQWNNIKEKRSKLENEITENMDTTTVMGGFMPYQRGSVSLTLGLRHGVENVQQQLQHEVELRHQFGGHMIHDFVG 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03454 668 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 641 - -
Car06g03454 668 SUPERFAMILY Homeodomain-like 476 540 IPR009057 -
Car06g03454 668 CDD homeodomain 474 535 IPR001356 GO:0003677
Car06g03454 668 ProSiteProfiles 'Homeobox' domain profile. 471 534 IPR001356 GO:0003677
Car06g03454 668 Gene3D - 477 539 - -
Car06g03454 668 Pfam Homeobox KN domain 491 530 IPR008422 GO:0003677|GO:0006355
Car06g03454 668 SMART HOX_1 474 538 IPR001356 GO:0003677
Car06g03454 668 Coils Coil 589 609 - -
Car06g03454 668 MobiDBLite consensus disorder prediction 84 104 - -
Car06g03454 668 Pfam Associated with HOX 265 409 IPR006563 -
Car06g03454 668 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 37 641 - -
Car06g03454 668 SMART prehox3 260 410 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03454 Car-Chr6 64905543 64912006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03454 203 544 Homeobox Transcription Factor Family AT5G02030 44.540 3.73e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Car06g03454 POX 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03454 - - cam:101502049 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03454 06 64905543 64912006 Car06g03454 06 64905543 64912006 ECH