Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03444 ATGCAGATAGAGTCCCTATCAGTTACTTTCCATGGACACGATCTCATAGTTGATTCTGAATTGGAGCTGAATTATGGAAGACGATATGGTTTACTTGGGTTAAATGGTTGTGGAAAGTCTACTCTGCTTACGGCAATAGGTTGTCGGGAACTTCCAATTCCTGAGCACATGGATATTCATCACCTTAGCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGTGATGAGGAGAGGTTGAAATTGGAGAAAGAAGCTGAAACTTTGGCAGCTCAGGATGACGGAGGAGGTGAATCCCTTGAACGTATCTATGAACGGTTGGATGCCCTAGATGCATCAACTGCAGAAAAACGTGCTGCTGAAATTTTACATGGTCTTGGTTTTGACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGAGGATGGAGAATGAGAATTGCATTAGCACGAGCTTTATTCATGAATCCAACCATTCTTCTACTTGATGAACCAACAAATCATCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTTTGGTTGTGATATCACATTCCCAGGATTTCCTTAATGGTGTCTGCACCAATATTATCCACATGCAGAGTAAAAAACTTAAGATGTACACTGGTAACTATGATCAATATGTTCAGACACGTGGTGACTTGGAAGAGAACCAGATGAAACAGTACAAGTGGGAACAAGAGCAGATTTCCAACATGAAGGAATATATTGCAAGATTTGGTCATGGTTCGGCTAAACTAGCTCGCCAAGCACAGAGTAAGGAAAAAACACTGGCAAAAATGGAACGAGGTGGACTTACAGAGAAAGTAGTCAGAGACCAAGTTTTAGTATTCCGTTTTACTGATGTAGGAAAACTTCCCCCTCCTGTTCTCCAGTTTGCTGAAGTATCTTTTGGTTACACTCCTGAGAATCTCATCTACAAAAACATTGACTTTGGAGTTGACTTAGACTCTAGGATTGCTCTGGTTGGACCAAATGGTGCTGGAAAGAGTACTCTTCTCAAGCTAATGACAGGTGATTTGTTTCCATCAGATGGCATGGTCAAGCGTCATAATCATCTTAGAATTGCACAATATCATCAGCACTTGGCTGAAAAGTTAGACTTGGACATGCCTGCCCTTCAGTTTATGATGAGAGAATACCCTGGAAATGAGGAAGAAAAGATGAGGGCAGCTATTGGTAGGTTTGGACTGTCAGGTAAAGCCCAAGTGATGCCTATGAAGAACTTGTCTGATGGGCAAAAGAGTCGAGTGATATTTGCGTGGTTAGCTTGGAGGCAGCCACATTTGCTACTTTTGGATGAGCCTACTAATCATTTAGATATTGAGACAATCGACTCTCTGGCTGAGGCATTGAATGAGTGGGATGGTGGTATGGTGCTTGTTAGCCATGACTTTAGGCTCATCAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGAACAAACTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGAAGCATCTAAAGGCAAAGGCAGGGATATCTGATTGA 1584 0.4242 MQIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIHHLSREIEASDMSALEAVISCDEERLKLEKEAETLAAQDDGGGESLERIYERLDALDASTAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKMYTGNYDQYVQTRGDLEENQMKQYKWEQEQISNMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDQVLVFRFTDVGKLPPPVLQFAEVSFGYTPENLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPSDGMVKRHNHLRIAQYHQHLAEKLDLDMPALQFMMREYPGNEEEKMRAAIGRFGLSGKAQVMPMKNLSDGQKSRVIFAWLAWRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCAEQTVTRWEGDIMDFKKHLKAKAGISD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03444 527 CDD ABCF_EF-3 312 504 - -
Car06g03444 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 506 IPR027417 -
Car06g03444 527 Gene3D - 1 265 IPR027417 -
Car06g03444 527 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 2 527 - -
Car06g03444 527 PANTHER - 2 527 - -
Car06g03444 527 CDD ABCF_EF-3 2 218 - -
Car06g03444 527 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 241 IPR003439 GO:0005524
Car06g03444 527 ProSitePatterns ABC transporters family signature. 145 159 IPR017871 GO:0005524
Car06g03444 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 227 IPR027417 -
Car06g03444 527 Pfam ABC transporter 212 284 IPR032781 -
Car06g03444 527 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 312 527 IPR003439 GO:0005524
Car06g03444 527 SMART AAA_5 337 503 IPR003593 -
Car06g03444 527 SMART AAA_5 25 227 IPR003593 -
Car06g03444 527 Pfam ABC transporter 19 173 IPR003439 GO:0005524
Car06g03444 527 Pfam ABC transporter 328 459 IPR003439 GO:0005524
Car06g03444 527 Gene3D - 276 525 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03444 Car-Chr6 64650132 64654275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03444 132 199 Calmodulin-binding Proteins AT2G36910 44.286 7.06e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03444 K06185 - gmx:100809491 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02527 01 51015679 51020393 Car06g03444 06 64650132 64654275 PCT