Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03441 atgggaagagCTCCATGTTGTGACAAAACAAGTGTCAAGAGAGGTCCATGGTCACCAGAAGAAGACTCAAAGCTTAAAGAGTATATAGAGAAACATGGCACTGGTGGGAATTGGATTTCTCTTCCTAATAAAGCTGGTCTCAAAAGATGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATCTTAGGCCAAACATTAAGCATGGAGATTTTTCTGATGAGGAAGATAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAGTTATAGCTGCTCAATTGCCAGGTAGGACCGACAATGATATCAAGAACTATTGGAACACAAAGTTGAAGAAAAAACTCATGGGTTTGCAACTTCCTATATCACATCAAAGAAAATCACCATTTCCACCTCCTAATTCTTCTCATTTATTTTCATTAGACTACTTTAGTCACACTCCAATACCCTTCACAAATCTTGAACCAATTTCACTTCCTTCAAATAATAATAATAACTATGCAAACACAAGTTTCACTCCTTTTTACCAAAACCAAGAGTACTCAATGATTAGTGTTAATAATCCAATGCAATATAATTACCCTATCAAAGACAACATGTTTATGTTTGGAAGTGAAGGAAGTTGTAGTTCATCCGATGGAAGTTGCACTCTTAGCCATGGCAAGGAAATCAAGCAAGAAGAAAATATTGGTTATCATCACATGTCTAGTAATGGATTTGATGATTACAACAATAACTTTATGATTAGTTGTAATAATGGTGGTGAAAATATTAACCAATATGAAGAAAAATCAAGTGGAGTTGGATACACTAATGGTCAAAGTCAAACATTAACTCCTTTACTAGATTATGGTCTTGAAGATATTAAGCAATTGATTTGTAGCAACAACAAAGGTTTCAATGTTGATGAAATTCATAAGATAGAAGAGAATGGTATGTATTACTACCACTACTGA 963 0.3396 MGRAPCCDKTSVKRGPWSPEEDSKLKEYIEKHGTGGNWISLPNKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLMGLQLPISHQRKSPFPPPNSSHLFSLDYFSHTPIPFTNLEPISLPSNNNNNYANTSFTPFYQNQEYSMISVNNPMQYNYPIKDNMFMFGSEGSCSSSDGSCTLSHGKEIKQEENIGYHHMSSNGFDDYNNNFMISCNNGGENINQYEEKSSGVGYTNGQSQTLTPLLDYGLEDIKQLICSNNKGFNVDEIHKIEENGMYYYHY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03441 320 PANTHER TRANSCRIPTION FACTOR RAX3 1 298 - -
Car06g03441 320 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Car06g03441 320 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car06g03441 320 SMART sant 67 115 IPR001005 -
Car06g03441 320 SMART sant 13 64 IPR001005 -
Car06g03441 320 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Car06g03441 320 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Car06g03441 320 Gene3D - 7 68 - -
Car06g03441 320 PANTHER OS09G0431300 PROTEIN 1 298 - -
Car06g03441 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car06g03441 320 Gene3D - 70 131 - -
Car06g03441 320 CDD SANT 16 62 IPR001005 -
Car06g03441 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Car06g03441 320 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03441 Car-Chr6 64604873 64606692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03441 1 127 MYB Transcription Factor Family AT5G57620 81.890 4.42e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g03441 Myb_DNA-binding 1.6e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02530 01 51055639 51057380 Car06g03441 06 64604873 64606692 PCT