Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03437 ATGTTGGTTATTTGGCCTATTCCTTCTGAGCATCAAGTGGCCCTAAATGTTGATGGTAGTTCATATGGAAATCCTGGTAGTCTAGAAGTCGAGCTCTTAGCCATATTGAATGGATTAAGGTTAGCTTGGGACATTGGTTGCAAAGATGTGAGTTGTAGATCAGACTGTATGAAAGCATTATCTTTGATTCAAGACGAGATATCTCAACCTTATAAATATGCTAAGATTATTCATGGTATCAAAGAACTTGTATCTAGAGATTGGGTTGTTTCGTTTGCACACACATACAGAGAAGGTAATCAATGTGCCGACTTTATGGCAAAGTTGGGAGCAAATGCCATGACTTGTGGTTTTGGTTTGGTACATCGTGGTGTCCTACTTGACGGGAAAGTCATTGCTATCAAGCAGTATAAATTAGCTAGTACTCAAGGAGATAAAGACTTTTCCTCAGAAGTTGATGTCTTTAGCTGCGCACAACACCACAATGTTGTGATGCTAATTGGGTTCTATGTGAAGGAGGGACGAAGATTGCTAGTTTGTGAGTATATTTGCAATGGAACGCTTGATTCTCATCTCTGA 579 0.3955 MLVIWPIPSEHQVALNVDGSSYGNPGSLEVELLAILNGLRLAWDIGCKDVSCRSDCMKALSLIQDEISQPYKYAKIIHGIKELVSRDWVVSFAHTYREGNQCADFMAKLGANAMTCGFGLVHRGVLLDGKVIAIKQYKLASTQGDKDFSSEVDVFSCAQHHNVVMLIGFYVKEGRRLLVCEYICNGTLDSHL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03437 192 CDD RNase_H_like 15 108 IPR044730 -
Car06g03437 192 Pfam Reverse transcriptase-like 27 108 IPR002156 GO:0003676|GO:0004523
Car06g03437 192 PANTHER OS01G0253100 PROTEIN 116 192 IPR045271 GO:0004714|GO:0006468
Car06g03437 192 Gene3D Phosphorylase Kinase; domain 1 115 183 - -
Car06g03437 192 Pfam Protein tyrosine and serine/threonine kinase 117 192 IPR001245 GO:0004672|GO:0006468
Car06g03437 192 Gene3D - 15 113 IPR036397 GO:0003676
Car06g03437 192 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 116 192 - -
Car06g03437 192 SUPERFAMILY Protein kinase-like (PK-like) 117 192 IPR011009 -
Car06g03437 192 ProSiteProfiles Protein kinase domain profile. 103 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03437 192 SUPERFAMILY Ribonuclease H-like 13 113 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03437 Car-Chr6 64493109 64495000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03437 117 192 Trihelix Transcription Factor Family AT1G23540 47.368 1.64e-19 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Car06g03437 PK_Tyr_Ser-Thr 1.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03437 - - gmx:100305413 128.257