Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03429 ATGCTCGCATTCCATTTCAAACCCTGCTTCTCTCTTCCCTTATCTTTCCGCATTTCCCTTAAACCCCCTTCTCTCGATTTCTCATTCCCTCGCCTCATTATGTCAAAGCCTCCTCCCTCCGCCTTCGACGCTCTCATGTCTGGCGCACGCGCCGCCGCCTCCAAAAAGAAACCCCTCCCCATTTCCTCATCTCCCAAAAAAAGAAAAAcccctccccctcccccttccgcttctccatccactctcccccAAAACCCTAACAACCTCAAAACCCCCGAAACCCTCCAAACCGTTCAAAAACCTCAAGAGATCGCTCAGCCAGAACCACCGAACAAGATCCGCAACACGTCATCTTCACTTTCTTCGAAGGAGATTATTGCCGAATTAAAGGAACGAGTTCCGAATCTGAAGAAAAAACCCTCTGATTTCAATCCCAGCTCCGTTGCTTGCTGGGGGAAAGACAAACCTGTACCGTTCCTTTTCCTATGCTTGGCGTTCGACTTGATTTCGGAAGAGACCGGAAGGATTGTGATGACTGACATTGTGTGCAATCTATTGAGGACAGTGATTCAGTCTACACCGGAGGATCTTGTTCCCGTTGTTTATCTTTCTGCTAACAGAATTGCTCCTGCGCATGAAGGGTTAGAATTGGGAATCGGAGATGCTTCTATTATTAAGGCGCTCGCCGAGGCGTGTGGAAGGACTGAACAACAGATTAAAATTCAGTATAAGGATAAAGGTGACTTGGGTTTGGTTGCTAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGATGCTTTGACTATTAGGAAGGTTTTCAACACCTTTCGTCTTATTGCAAAGGAATCTGGAAATAACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGATTGTGAACCTCTATATATAATCCGTTTGCTACAGACCAAGTTGCGAATTGGATATGCTGAGCAAACTCTTTTAGCTGCAttaggccaagctgcagtgtacactgaagaacattctaaaccgcctcttggaattcagtctccttttgaagagGCTGCAAAGATTGTTAAAAAAGTCTACTCTGTTCTTCCTGACTATGACAAAATGTTGTCTGCACTGCTTACGGATGGTGTATGGGAACTTCCAAACAAATGTAATTTTACTCCTGGTGTTCCTGTTGGGCCTATGTTGTCAAAAGCAACCAAGGGTGTATCTGAAATTTTAGATAAGTTCCAGGATGTGGAGTTTACATGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGGATGGCTCGGTTGAGATTTACAGTAGAAATGCTGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACATTGGTATCATCATTTATTCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCTTTCCAGGTGCTTAGTACTCGGGCCCGCAAAAATGTAGCTTTGAGTGACATAAAAGTTGAAGTTTGCATATTTGCTTTCGATATGTTGTACCTTAATGGTAAAGCACTTCTTCAGGAAAACCTGAAAATCCGTAGAGAGCATCTCTATGCTTCTTTTGAGGAAGAATCTGGATTCCTTCAGTTTGCAACATCAATAACATCAAATGATATTGAGGAAATACAGAGATTTCTTGATGAAGCTGTTGATGGAAGTTGTGAGGGATTAATTATTAAAACATTAAATGAAGATGCTACATATGAACCCTCCAAGCGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGATTCACTAGATTTGGTGCCTATTGCTGCTTTCCACGGTCGTGGGAAACGTACAGGAGTCTACGGTGCCTTTCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACTGGATTCTCTGAAGAAGTGCTTGAAGAACGTTCTACTAGCCTTCGCTCTAAAGTGATTCCCAAACCAAAGTCATATTATCAATATGGAGAAGCAATCAAACCGGATGTTTGGTTTGATGCCAGCGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTACCGAGCTGCAGTTGGCACAGTACATTCCGATAAGGGCATATCTCTTCGATTTCCGCGTCTAGTACGAGTTCGGCCTGACAAAGCTCCTGAACAGGCCTCATCGTCTGAGCAGGTTGCTGAAATGTATAAAGCTCAAAAACATAATCATAATCACAACGGCAACATGGATGACAATGAAGATGATTGA 2325 0.4047 MLAFHFKPCFSLPLSFRISLKPPSLDFSFPRLIMSKPPPSAFDALMSGARAAASKKKPLPISSSPKKRKTPPPPPSASPSTLPQNPNNLKTPETLQTVQKPQEIAQPEPPNKIRNTSSSLSSKEIIAELKERVPNLKKKPSDFNPSSVACWGKDKPVPFLFLCLAFDLISEETGRIVMTDIVCNLLRTVIQSTPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIKIQYKDKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGNNSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPLGIQSPFEEAAKIVKKVYSVLPDYDKMLSALLTDGVWELPNKCNFTPGVPVGPMLSKATKGVSEILDKFQDVEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVAAVSRLKKTLVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVALSDIKVEVCIFAFDMLYLNGKALLQENLKIRREHLYASFEEESGFLQFATSITSNDIEEIQRFLDEAVDGSCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEEVLEERSTSLRSKVIPKPKSYYQYGEAIKPDVWFDASEVWEVKAADLTISPVYRAAVGTVHSDKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYKAQKHNHNHNGNMDDNEDD 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03429 774 Gene3D - 609 771 IPR012340 -
Car06g03429 774 MobiDBLite consensus disorder prediction 739 774 - -
Car06g03429 774 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 140 391 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car06g03429 774 ProSiteProfiles ATP-dependent DNA ligase family profile. 506 642 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car06g03429 774 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 216 756 IPR000977 GO:0003910|GO:0005524|GO:0071897
Car06g03429 774 ProSitePatterns ATP-dependent DNA ligase signature 2. 578 604 IPR016059 GO:0003909
Car06g03429 774 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 74 773 - -
Car06g03429 774 CDD OBF_DNA_ligase_I 612 757 - -
Car06g03429 774 MobiDBLite consensus disorder prediction 52 120 - -
Car06g03429 774 CDD Adenylation_DNA_ligase_I_Euk 389 607 - -
Car06g03429 774 SUPERFAMILY Nucleic acid-binding proteins 612 758 IPR012340 -
Car06g03429 774 Gene3D DNA ligase/mRNA capping enzyme 429 554 - -
Car06g03429 774 Pfam ATP dependent DNA ligase C terminal region 629 740 IPR012309 GO:0003910|GO:0006281|GO:0006310
Car06g03429 774 PANTHER DNA LIGASE 1 74 773 - -
Car06g03429 774 Gene3D - 112 402 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car06g03429 774 MobiDBLite consensus disorder prediction 755 774 - -
Car06g03429 774 MobiDBLite consensus disorder prediction 82 120 - -
Car06g03429 774 Pfam DNA ligase N terminus 158 333 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car06g03429 774 MobiDBLite consensus disorder prediction 65 81 - -
Car06g03429 774 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 424 432 IPR016059 GO:0003909
Car06g03429 774 Gene3D - 410 608 - -
Car06g03429 774 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 392 610 - -
Car06g03429 774 Pfam ATP dependent DNA ligase domain 400 604 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03429 Car-Chr6 64361416 64368056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03429 34 772 Core DNA Replication Machinery Family AT1G08130 66.401 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03429 K10747 - gmx:100783155 1150.19