Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03414 ATGAAATTCTACAACCGGATGTTGCTCCTACTAAACGAGGATGTTCCAATCTCATCATCTATTCCCCCTTCTCCTCAAATTCAACCCACCACCATAAACGCATCCTCACCGTTCAATTCAATCACTCCATCATCTAAAACATTTACAAGCCCTTTACAATTACAATTACCATTTCGTCCAATTCTCTCTTCCAACATCGCCTACACTTTTCTCCTCGTATTCTCCACACTTTTCTTCTTCGTCTTCGTCCTCTTGTCGATCCGTGAATTCTCATCCAATCGCCGCCGTCGCAACCCGCCGTACCGTGGTGCTGATATTGCCGTCGTGAAGTCTCTGCCGGTGTGTTCGTACCGGGAGGATGTTAAGCAACCCGACTGTGTGATATGTTTGGAGGAGTTTCGAGAGTGTGATGTCGTGAAGATTATTCCTTCTTGTAGGCACGTGTTTCATCCTGAATGTATTGACACGTGGCTTTCTTTGCACGTGACGTGCCCTATTTGTAGGTGTGATATGGTGTGCGGTGGGGTAGTGGATGACCCTGCGGGAAGATCAACGGTGGAGAATGGAGGAGATTGA 576 0.4705 MKFYNRMLLLLNEDVPISSSIPPSPQIQPTTINASSPFNSITPSSKTFTSPLQLQLPFRPILSSNIAYTFLLVFSTLFFFVFVLLSIREFSSNRRRRNPPYRGADIAVVKSLPVCSYREDVKQPDCVICLEEFRECDVVKIIPSCRHVFHPECIDTWLSLHVTCPICRCDMVCGGVVDDPAGRSTVENGGD 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03414 191 SMART ring_2 126 167 IPR001841 -
Car06g03414 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 76 173 - -
Car06g03414 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 173 IPR013083 -
Car06g03414 191 SUPERFAMILY RING/U-box 109 172 - -
Car06g03414 191 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Car06g03414 191 CDD RING-H2_PA-TM-RING 125 168 - -
Car06g03414 191 Pfam Ring finger domain 125 168 IPR001841 -
Car06g03414 191 PANTHER RING FINGER DOMAIN-CONTAINING 76 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03414 Car-Chr6 64124164 64125340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03414 62 172 C3H Transcription Factor Family AT2G27940 38.298 1.66e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03414 - K10664 mtr:MTR_4g056590 243.432