LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g03413	ATGGCTATTGCTGGTTTGCACAGTGTGTCTGTGCTCGACTCTTCATTCTTGAGGGATTCGCAGTCACAGGCCTCCAGAAGGAGGGGAGATGGGAGGAGGGGAACCACCCGGTCATCTTCACTTTTGCAAATGTGGAGAGAGATTGAGGATGAACATGCGGTGAGTCAAGTTCAAGGAAGATCTCGTGGGTCAGTTGTGGACCTTTCACGAGAAGCTACACCTGATAGCCCAGAGATAGGACAAAGGCATGCTCTAGAAGATGCAGATTTGGGTGAGAATGAGTCTGAAACATGGTCACAGTCGCAGAGTCCGAATGAATCCCATGATGGTCATGAGGATTTAAACAATTCTAGTTGTGAAAACTCTTCTGAGTTTGGAGAAGTTGAAAGGGAGAGAGTGAGGCAAATTTTCAAGGAATGGATGAATAGTGGTTCTAGGGACCGTGGCTCAAACATTTCCCGAAGAAGTAACAGTCCAAGGGGAGAATGGCTTGGAGAAACTGAACAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAGTGTTTCATCTGGAGAAAACAGGGAACAACCGTGTGCTGAAATTGGTACACAAATTGAACGTGTGCGTGATGGATTTGTTGTTAACCACAGTGAGGGCCAAAATGATCAAATAAGGAGGGGTATGCGTAAATTACGTGGCAAACAGGTTATGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAGAGAGAAATTCAAGAGTTACTGGACCATCAGGTTGTATCACGTTTTCCCCATCGCAATCGAATTCAGGCATTGCTTCGAGGGAGGTTCTTGAGAAATGATAGATCTGTTGATCATAACAGGTCCACGTGTATTGCAGAAAGTGAATTAGGTTTATTGAGGCGAAGACAAACTGTTTCGGGTCTAAGGGAAGGATTCTTCTCTAGAATGGACAATACCAGTTGCAGTCAAGCAACCAGCAATCTATCTGATACCTCATCAAACATTGATATTGATTTTAATACAAATGAACTAACCAGAGAAAGCAGTTCACCTGTGGTTCTACATGTACATTCTGAACCTAATAACAGAAGAGATGATGGGATATCTGGTGGCCACTGTCTAGAAGGAACTACATGTGAGAGTTCAGATTGGCAAGAATCTACCGCCCATCCAGAAGGAAATCAGTTGCAGTGCTTGCAAATTGAATCAGTAGATAGGCAGTCATCATTCAGTGTTGGGTGTGAAAGAAGGGATGATACTGGGCAAAATGTTGATGTGATGGCAATTAGAGATCAGGCTGATGAACTTATCCAACAAAGCTTACAAATTGATGATTCAGAGCATAGTAGTAATCAGGAATCCAGCGAGGTACAGAATGAGCAATCTGAATTGGGTGATATGAATAATGGTGAAAACAATTCTTCAAACCACAATGATTATGTGGAGGGTAATGTTGATGATGTGAACTATGGACCTGATTCCCTAGAAGAACAGCTAGAAGAAATTATTGAAAATGAAGAAAGTGGCTCGCATCAGAGTAACACTGAATGGAGAAATAGCACTGAGGAAAGTGTAGATGATAATCAGCTCAGCAATACAGAAAATGAGTGGCCTGAAAACAGTTGGGCAAATGAGGATGTTGAAAACCCTCATGTGCAAGAAGCTTCTGAAGCGTGGCAAGAGGATGGTGGCTTCCAAGAGGCGGTGGAAAATTGGTTGGGAGGACCTTCTGACCAAGAAAGTGCTCAAGTTGGTAGAGTTCATGGTTTTTATTTTCCCGATGATGACAATGTATACAGTGGTGAACTCAGGGAACTTCATAGTAGGAGACGTGTCTCTAATCTCCTTGGCAGTAGTTTCCGTGAGAGGCTTAACCAGCTGATACAGTCATATGTTGAAAGACAAGGTCATGCTAACATGGAGTGGGACCAGGAAGAAGCAACCTCTTCTGTTGCCTTGGTAGAACAGGACCTTGAGCAGCAGAGTAGATATCAGAATGTTGATCAGGAGGTTAATATTAATAGTCCAATTGACTTTCCTCCTTTGCCTGCACCTCCTACTCCGCCTCTTTGGGATCAGCATCCTCATGGTGATAACTGGTCACACAATGATGATTTGGAGATTATTAATGACTTGAGACTGGACATGGCTAGATTGCAACAAAGGATGAATAATATGCAGAGGATGCTTGAGGCATGTATGGATATGCAGCTTGAACTGCAACGCTCAATAAAACAAGAAGTTTCTGCTGCCCTAAATCGCTCAGCCGATTCATCAGGAATGCACGACTTCAACTCACCAGATGATGATTCTAAATGGGAATGTGTCAGAAAAGGACTTTGCTGTATTTGCTGCCAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGTAAACAAAAATGCCCAATGTGTCAAGCGCCTGTAGTGGAGGTTATACGTACTTATTCTATACTATAA	2508	0.4302	MAIAGLHSVSVLDSSFLRDSQSQASRRRGDGRRGTTRSSSLLQMWREIEDEHAVSQVQGRSRGSVVDLSREATPDSPEIGQRHALEDADLGENESETWSQSQSPNESHDGHEDLNNSSCENSSEFGEVERERVRQIFKEWMNSGSRDRGSNISRRSNSPRGEWLGETEQERVRIIREWVQMSSQQRSVSSGENREQPCAEIGTQIERVRDGFVVNHSEGQNDQIRRGMRKLRGKQVMLDMLKKAERERQREIQELLDHQVVSRFPHRNRIQALLRGRFLRNDRSVDHNRSTCIAESELGLLRRRQTVSGLREGFFSRMDNTSCSQATSNLSDTSSNIDIDFNTNELTRESSSPVVLHVHSEPNNRRDDGISGGHCLEGTTCESSDWQESTAHPEGNQLQCLQIESVDRQSSFSVGCERRDDTGQNVDVMAIRDQADELIQQSLQIDDSEHSSNQESSEVQNEQSELGDMNNGENNSSNHNDYVEGNVDDVNYGPDSLEEQLEEIIENEESGSHQSNTEWRNSTEESVDDNQLSNTENEWPENSWANEDVENPHVQEASEAWQEDGGFQEAVENWLGGPSDQESAQVGRVHGFYFPDDDNVYSGELRELHSRRRVSNLLGSSFRERLNQLIQSYVERQGHANMEWDQEEATSSVALVEQDLEQQSRYQNVDQEVNINSPIDFPPLPAPPTPPLWDQHPHGDNWSHNDDLEIINDLRLDMARLQQRMNNMQRMLEACMDMQLELQRSIKQEVSAALNRSADSSGMHDFNSPDDDSKWECVRKGLCCICCQSNIDSLLYRCGHLCTCSKCANELLQSKQKCPMCQAPVVEVIRTYSIL	835

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g03413	835	MobiDBLite	consensus disorder prediction	446	494	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	510	543	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	507	543	-	-
	Car06g03413	835	PANTHER	PROTEIN, PUTATIVE-RELATED	1	834	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	52	127	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	446	484	-	-
	Car06g03413	835	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	1	834	-	-
	Car06g03413	835	Coils	Coil	711	738	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	681	700	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	144	163	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	141	163	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	17	39	-	-
	Car06g03413	835	CDD	mRING-HC-C3HC5_NEU1	783	821	-	-
	Car06g03413	835	Coils	Coil	234	261	-	-
	Car06g03413	835	MobiDBLite	consensus disorder prediction	76	90	-	-
	Car06g03413	835	Pfam	Zinc finger, C3HC4 type (RING finger)	780	827	-	-
	Car06g03413	835	ProSiteProfiles	Zinc finger RING-type profile.	783	822	IPR001841	-
	Car06g03413	835	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	770	833	IPR013083	-
	Car06g03413	835	SUPERFAMILY	RING/U-box	782	829	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g03413	Car-Chr6	64046515	64055115	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g03413	783	829	C3H Transcription Factor Family	AT3G06140	42.553	1.48e-06	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g03413	-		-	gmx:100801329	1118.61