Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03402 ATGGAGCAACCTGTTGTGAGATCGAGAGGTCGTCCTAGGAAACGAAGAAAGGAGGAGGATGAAAAGGAAGTAAAATCCAAATCGGTTCATGAAGCTAAAAGGCAAGCTTCAGAGACTAGATCGATAGCATTGGTTGGCAGGTACGTACTTAAGAATTTTCCGGGAAATGGTGTTTTTCTTGGAAAAGTAGTGTACTATGAACTAGGATTGTATCGAGTCAATTATGAAGATGGGGATTTTGAGGATTTAGAGAGTGGTGAAATTCGTCCTATACTTATCAGCAATGTTGATTCCGATGTTGATTTAGTAAGGAGGATGAACAAATTGGAGAAGTTAGTGTTGAAGAATAGTGCGAAGGTCTCTGTAAAAGCAAAATCTGCAGTTGATGTGGCTGTTCCGAGTGAAGGTGGATTATCAGTTGAAAAGGATAAGGATAAGGATGAAGATGATGAAGTTGGTGCTGATTCCTCAAGTGACTCTGACACTGGTTTGATGGAAAGGGATTCTGTTTCTGATGTTGAGACACCGCCTTTGCCACCACAGTTGCTGTTGCCGCCTTCGTCGGGAACTATTGGTGTGCCGGAGCAGTGTGTTTCACATCTTTTTTCTGTTTATGGATTCTTAAGATCATTCAGCACTCGCTTGTTTCTTCAACCTTTTACTTTGGATGAGTTTGTTGGTTCTCTTAATTGTCAAGTCTCTAATTATTTGTTTGATGCTATTCATGTTTGTTTGATGCGGGTGTTGAGGCGTCATCTTGAAACCCTCTTGTCTGAGGGCTCTGAGCTTGCATCGCAATGCCTCAGGTACTATGACTGGAGCTTGGTCGATACATTGACCTGGTCTGTTTTTGTTATTCTATATTTGGCGGTCAACGGGTACACAAAAGGACCCGTATGGAAAGGATTCTTCGATGAGGTTTTTACTGGCGAGTATTATTTATTGCCTGTAAGTAGGAAGTTAATGATACTGCAAATTCTCTGCGATGATGTTTTAGAATCTGAGGAGCTAAAAGCTGAAATGAACTCGCGAAAGGAATCAGAGGTCGGGATGGATTATGACGCAGAAGATATCCTTCCTGCGGAAACTGGGCCGAAAAAAGTCCATCCAAGATATGCCAGGACCTCGTCTTCTGAGGATAAAGAAGCCATGAAATTGGTTTCCACATCAAATGCTGTGAACCAACCTGGTAACTCTATATCAGAAAGCACAGGGGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGTATGGACGGAACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCGAGGTGTATTGGCGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATCAATATGACTGGGCCCACAATTGCCAAGGAAACCTCACTTAGAGGGGCTGAGATATTTGGAAGGGATTTGTATGGGCAACTCTTCATGGGTACTTGCGACCACTTACTTGTGCTTAACATTGACAACAATGAATTTTGTCTTAGATATTACAACCAGAACGACATCCCCAAAGTTATCCAAGTGCTTTGTGAATCCATGCAACATAGACCAATGTACTATGGTATTTGCATGGCAGTGTTACAATATTGGAATGTTTCAGGAAACTTCTTACCTCTTTCTGCTTCAATTGAGACAGATATAGAGGATGAGACAAAATTCGCTACCCCTTTACTTCCTCCTCCAAGTGAAGGCAACCATAAACCTGTTAGTTTGGTCAAGGGAGAGTGCTCTCCAACCACTGCAAGTTTCACTCACAATGATAATATGGGGCCTTCTCTTAATGCTTTTCAAGCTATCACTCAAAGTCCTGCTCTTGAAAACAGTGGCAATGCTAGAACTGAAGAGTGCTGTACTGTGAATGCGAAGCTTGCCGAGGAAACTGGGACGGATGTGATAATTTCAGCTGGCTCTGTTAGTCATCAGTCCAACATGAGCTTTCAGAATTCTGTCAATATGTCAACTGCAGTAGATAATGATATGTGCTCTTTGGTAAACAGTCAATTTAGTAACTGTGGTCATGTAAACGATATGGGGTTGCCTATGAATTTTTCTTTGCAAACCAAAGAAAACACCCAAGTGGGTTTTGGAAAGTGTGGACGCAATTCAACTGATGATTGTTACATGGGTTTCTCCTATAAGCCCATGTCATACATAAATTACTATATGCATGGTGATTTTGCTGCATCGGCAGCTTCTAAATTTTCCATCATTTCTTCAGAGGAATCTAAGTTGGTGGAAGGTCATGTGTCAGACAGCCAGAAGAAAACTGCAGCTGCATATACTTATTTGCAAGCAAAAGCATTCTCACTAGCAGCTTCGCGTTTCTTTTGGCCAAGTTCCGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGTTGGTGCATTTCTTGTAAAGCCAATGTTTCTAGCAAGAGAGGGTGCATGTTAAATCATGCTCTTATAAGTGCCACAAAAGGTGCTATGAAAATCCTTGCTACTTTTTCTCCTATAAGGAGTGGAGAGGGAATTCTTCCTAGCATTGCAACTTACATTTTGTATATGGAGGAATGTTTACGTGGTTTAATAGTTGGGCCCTTCCTAAATGCAAGCTATAGACGGCACTGGCGTAAGCAAGTGGATCAAGCCACAACATTTAGTGCTATCAAGCCACTTCTACTCAAACTTGAAGAGAACATTCGAATCATTGCTTTTTGTGGGGACTGGGCTAAGCTGATGGACGATTGGTTGGTTGAATTTCCTGTTATACAAAGTGCCACATCTACTCTAGGAACAACTCAGAAACGCGCACCAGGTGGGAGGCGTTATAAAAAGAAGTTACCTATTGATGAAGCTACAGCTGACGGTTCCCAGGAAAACATTTGGTGGCGCGGTGGACAGTATAGCAAATTTTTATTTCAGAATGCAGCTTTGCCAAAATCCATGATCAGAAAAGCTGCTCGTCAAGGTGGTTCGAGGAAAATTTCTGGTATTTTCTATGCTGATGGCTCTGAAATTCCCAAAAGAAGTAGACAGCTTGTTTGGAGAGTCGCAGTTCAAATGAGTAGGAATGCCTCACAGCTGGCACTACAGGTCAGATATCTTGATTTTTACCTTAGATGGAGTGATCTGATTCGTCCGGAGCAGAACATACAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAAAAAACTTGTAGAGGGAAAAATTTGTTATGGAATAGCTTTTGGGAGCCAAAAGCATCTTTCTAACCGGGTGATGAAAAGTGTTATTGAAACGGAGCAAGGTTCACAAGGAAAAGTCAAGTTTTGGTTTTCTGAAACTCGGATTCCTTTATATTTGGTAAAAGAGTACGAAGAAGGTAATGAAAAGGTTATATGTGAagaggactatagtagtacatctcagttgctcagaaggcggttgaaaGGTACCCACAATGACATATTCTTTTACCTTGTTTGCAAGAGAGACAACTTGGCATTCTCGTGTTCTACATGTCAGATGGGCATTTCAATTCGGAATGCTTACAAGTGTAATGCATGTCAAGGTTATTGTCATGAGGACTGTTCCATAAGTTCAGTCTCTAGACTCTCTACAAATGGCGGAGTTGAGCACTTGACCACATGCAAACAATGTCACCATGCCATGTTACTTGCTCCAAATGAAACTATTGATGAATCTCCAACCAGTCCCTTAATCTTACAAAGACAAGAAAACAGCTCTGGGACTGTTTTTAAGGGACCAAGGTCAAAGGCTGGTCATTCTGACACAAAACAAGTTAGTTCCATGTCAGCTTCAAAAGGACCAAAGCGTAAATGTCATGAGCAAACTTTGACTTCTACCAAGAGAAAGAATAGTCATCCTGAGACGAAACAAGCTGCATCTGATTCCACTTCGGCATCAAGCGCCCGTCGCAATAATTGTTCTTGGGGTATTATATGGAAAAAGAAAATTAATGAAGATCCAAACATTGATTTTAGGATGAAAAACATACTTTTAAAGGGTGGATCAGACATACCTGATCTGGAACCTGTTTGTCACTTATGCAAAAAGGCATATAGGTCAGATCTAATGTATATTTGCTGCGAGACATGTCAAAATTGGTATCATGCTGAAGCTATTGAACTTGAAGAATCCAAAATTTCGGATGTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCACCTGCATGTCCTTACTCTGATTCAAAACCTAAGTCAGAAGTTAAGAAATCACGCAGAAGGGCTTCAAAGAAAGAGCACTATGCCGCAGATTCTGATTCTGGAACATTTAATGATATGAGAGAGTGTGAACCTGCTACTCCTGTCTTCCCTGTGGAGAACGATCCTTTACTTTTCAATCTTGCAAATGTTGAGCTGATTACAGAACCTAATAACTTAGATATGGATGTTGATTGGAACAATGTCTCCATGCCAGGACCTCAGAAATTACCGGTCAGAAGGCATGTTAAGCATGAGGGAGATGGTGATGGTTCTGTTGTAGGAGTACCTTTACATGCTGAATTTGCAACGAATAGTGAAGTAGGTAATCTGTCCAATCCTGCAGACTCCATGTTACCTTTTGAATATGACCCTGCCGCTTTTGACAGCAATCTGTTGAACAACTCTGAAAATGTAAATAATGAATACATGGAGTATGAAGACAATACCTACTTCGATCCAGCTGAATTGTTGCCCTTAGATGGTGGCGAcacccattttgatggaggcgatgacgcccattttgatggaggcgatgacacccattttgatgGAGGCGATGTGTCTGCGGAATTGTTGGACTTGGATTATTTCAAGAACCCTGATACCGCTGTTCCTGAAGAATATGGAGATGCCATCTATAGTTGTTATAGCTCCCCAAGGACGAGTAGCTATAGAACTTGGGAGCAAATTTATTTTGCGCACTTTGAGACGCTAATTGGCTTCTGCCCTGTTCACAAAAATATGTTGCTTCCTGGGTGCCCAGTGGACCCAATTTTGTCGAAAAAAGTCGTATGGTATAGTTTTCAGACAGCAGTAGTTGGTTTCGTTGATACTATCGGATCATGGTTTATCGGCTGA 5133 0.4062 MEQPVVRSRGRPRKRRKEEDEKEVKSKSVHEAKRQASETRSIALVGRYVLKNFPGNGVFLGKVVYYELGLYRVNYEDGDFEDLESGEIRPILISNVDSDVDLVRRMNKLEKLVLKNSAKVSVKAKSAVDVAVPSEGGLSVEKDKDKDEDDEVGADSSSDSDTGLMERDSVSDVETPPLPPQLLLPPSSGTIGVPEQCVSHLFSVYGFLRSFSTRLFLQPFTLDEFVGSLNCQVSNYLFDAIHVCLMRVLRRHLETLLSEGSELASQCLRYYDWSLVDTLTWSVFVILYLAVNGYTKGPVWKGFFDEVFTGEYYLLPVSRKLMILQILCDDVLESEELKAEMNSRKESEVGMDYDAEDILPAETGPKKVHPRYARTSSSEDKEAMKLVSTSNAVNQPGNSISESTGDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMTGPTIAKETSLRGAEIFGRDLYGQLFMGTCDHLLVLNIDNNEFCLRYYNQNDIPKVIQVLCESMQHRPMYYGICMAVLQYWNVSGNFLPLSASIETDIEDETKFATPLLPPPSEGNHKPVSLVKGECSPTTASFTHNDNMGPSLNAFQAITQSPALENSGNARTEECCTVNAKLAEETGTDVIISAGSVSHQSNMSFQNSVNMSTAVDNDMCSLVNSQFSNCGHVNDMGLPMNFSLQTKENTQVGFGKCGRNSTDDCYMGFSYKPMSYINYYMHGDFAASAASKFSIISSEESKLVEGHVSDSQKKTAAAYTYLQAKAFSLAASRFFWPSSEKKLVEVPRERCGWCISCKANVSSKRGCMLNHALISATKGAMKILATFSPIRSGEGILPSIATYILYMEECLRGLIVGPFLNASYRRHWRKQVDQATTFSAIKPLLLKLEENIRIIAFCGDWAKLMDDWLVEFPVIQSATSTLGTTQKRAPGGRRYKKKLPIDEATADGSQENIWWRGGQYSKFLFQNAALPKSMIRKAARQGGSRKISGIFYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDKKLVEGKICYGIAFGSQKHLSNRVMKSVIETEQGSQGKVKFWFSETRIPLYLVKEYEEGNEKVICEEDYSSTSQLLRRRLKGTHNDIFFYLVCKRDNLAFSCSTCQMGISIRNAYKCNACQGYCHEDCSISSVSRLSTNGGVEHLTTCKQCHHAMLLAPNETIDESPTSPLILQRQENSSGTVFKGPRSKAGHSDTKQVSSMSASKGPKRKCHEQTLTSTKRKNSHPETKQAASDSTSASSARRNNCSWGIIWKKKINEDPNIDFRMKNILLKGGSDIPDLEPVCHLCKKAYRSDLMYICCETCQNWYHAEAIELEESKISDVLGFKCCKCRRIKSPACPYSDSKPKSEVKKSRRRASKKEHYAADSDSGTFNDMRECEPATPVFPVENDPLLFNLANVELITEPNNLDMDVDWNNVSMPGPQKLPVRRHVKHEGDGDGSVVGVPLHAEFATNSEVGNLSNPADSMLPFEYDPAAFDSNLLNNSENVNNEYMEYEDNTYFDPAELLPLDGGDTHFDGGDDAHFDGGDDTHFDGGDVSAELLDLDYFKNPDTAVPEEYGDAIYSCYSSPRTSSYRTWEQIYFAHFETLIGFCPVHKNMLLPGCPVDPILSKKVVWYSFQTAVVGFVDTIGSWFIG 1710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03402 1710 SUPERFAMILY FYVE/PHD zinc finger 1352 1413 IPR011011 -
Car06g03402 1710 ProSitePatterns Zinc finger PHD-type signature. 416 457 IPR019786 -
Car06g03402 1710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 468 IPR013083 -
Car06g03402 1710 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 300 342 IPR028942 -
Car06g03402 1710 SUPERFAMILY FYVE/PHD zinc finger 404 463 IPR011011 -
Car06g03402 1710 PANTHER PHD FINGER FAMILY PROTEIN 1 1594 - -
Car06g03402 1710 Pfam PHD-finger 416 458 IPR019787 -
Car06g03402 1710 SMART testlast3 195 255 IPR018501 -
Car06g03402 1710 Pfam DDT domain 196 252 IPR018501 -
Car06g03402 1710 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Car06g03402 1710 ProSiteProfiles Zinc finger PHD-type profile. 413 460 IPR019787 -
Car06g03402 1710 MobiDBLite consensus disorder prediction 1254 1318 - -
Car06g03402 1710 MobiDBLite consensus disorder prediction 1283 1305 - -
Car06g03402 1710 CDD PHD_SF 1360 1407 - -
Car06g03402 1710 CDD PHD2_CHD_II 416 457 - -
Car06g03402 1710 MobiDBLite consensus disorder prediction 13 34 - -
Car06g03402 1710 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1594 - -
Car06g03402 1710 MobiDBLite consensus disorder prediction 1415 1449 - -
Car06g03402 1710 MobiDBLite consensus disorder prediction 137 185 - -
Car06g03402 1710 SMART PHD_3 1177 1228 IPR001965 -
Car06g03402 1710 SMART PHD_3 415 458 IPR001965 -
Car06g03402 1710 SMART PHD_3 1360 1408 IPR001965 -
Car06g03402 1710 MobiDBLite consensus disorder prediction 1 34 - -
Car06g03402 1710 Gene3D Cupin 1356 1495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03402 Car-Chr6 63824100 63835942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03402 285 559 EF-hand Containing Proteins AT5G22760 49.825 9.73e-82 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Car06g03402 DDT 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03402 - - lang:109351702 2039.62