Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03401 ATGGAGGATCAAAACCTGAACTTACCGGTGGCTTTATCACCGTGTTCCACCCAAAACGGGTCAGAAACAACCAACAACGCCGCCGTGACGGAAGCTGCCGGAGTTGACGCCGGTTCGGACACCGGAGCGAAGTCCGAAGGTGGTGGTTCGGGATTACAAGGTGTTAAAAGGGGGAGAGGGAGACCTCGGAAGTACGAGGTTGATGTCAACCAGATTTCTCCGGCGCCGTTGTCACCGTCGCCGGTGGGAATTGCTATGCAGCCTTTTGGTAGTGATTCGAAACGTGGAAGAGGACGTCCTCGTGGTTCTGGAAAACTTCAGATTTTGGCTTCTATTGGTGGATGTGTTGCAGAAACGGCTGGTGGAAGCATCACTCCTCATGTGGTGACTGTGAACCCTGGAGAGGATGTGGTTGGAAAGATATTTTCATTTTTTCAGAAAGGTCCTAGAGCAGCTGTGTGCATACTATCTGCTACTGGAACTGTATCAAGTGTCATCCTTCGTCAACCTGGTGCTTCTGATGGTTGTTTAAGATATGAGGGTCGGTTTGAGATTTTAACTTTAAGTGGATCATGCACTTATACCAGTGGTGCTGGTGGTGCACAAAGAAAAGTTGCTATGTTGAGTGTTTCATTGGCTAAACCTGATGGAAGAGTTTTTGGAGGTGGTGTTGAGAACTCATTGATAGCTGCTACCCCTATTCAACTTGTTTTGGCCACATTCAAGCAAAACATAAGTAATCAAATCAAGAGAAAGTACTCATCATCTCAAACTCCAACTACTCCAGATTCAACAAGAGATAACTTGAAAGTTCCCAAGTTAACTATAGAAGGAGATATAGAAGGAGATAATAATGTGACAAATACTAATGATGTAACAGTAGCGGATAATAATGTGAAAGTTGAAACAACAATTGATAATGTCACTACTATTGTTGTTGGTGATGAAAATGTGCAATCTGATTATGTTGGTGGAGGAATTGACTTGGACAACAAGGCATTGGAGTTTGTTACTACAGATCATAAAACATGTTCAGATGTCGATGCTAACAGTGTTCCTCAAATATGA 1068 0.4363 MEDQNLNLPVALSPCSTQNGSETTNNAAVTEAAGVDAGSDTGAKSEGGGSGLQGVKRGRGRPRKYEVDVNQISPAPLSPSPVGIAMQPFGSDSKRGRGRPRGSGKLQILASIGGCVAETAGGSITPHVVTVNPGEDVVGKIFSFFQKGPRAAVCILSATGTVSSVILRQPGASDGCLRYEGRFEILTLSGSCTYTSGAGGAQRKVAMLSVSLAKPDGRVFGGGVENSLIAATPIQLVLATFKQNISNQIKRKYSSSQTPTTPDSTRDNLKVPKLTIEGDIEGDNNVTNTNDVTVADNNVKVETTIDNVTTIVVGDENVQSDYVGGGIDLDNKALEFVTTDHKTCSDVDANSVPQI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03401 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 333 IPR039605 GO:0003680
Car06g03401 355 MobiDBLite consensus disorder prediction 1 30 - -
Car06g03401 355 MobiDBLite consensus disorder prediction 250 269 - -
Car06g03401 355 CDD DUF296 125 241 IPR005175 -
Car06g03401 355 PRINTS AT-hook-like domain signature 56 66 IPR017956 GO:0003677
Car06g03401 355 PRINTS AT-hook-like domain signature 92 103 IPR017956 GO:0003677
Car06g03401 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 126 242 IPR005175 -
Car06g03401 355 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Car06g03401 355 SMART AT_hook_2 94 106 IPR017956 GO:0003677
Car06g03401 355 Gene3D - 126 261 - -
Car06g03401 355 MobiDBLite consensus disorder prediction 250 268 - -
Car06g03401 355 ProSiteProfiles PPC domain profile profile. 121 262 IPR005175 -
Car06g03401 355 Pfam AT hook motif 94 104 IPR017956 GO:0003677
Car06g03401 355 Pfam AT hook motif 56 67 IPR017956 GO:0003677
Car06g03401 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 245 - -
Car06g03401 355 PANTHER DUF296 DOMAIN PROTEIN 1 333 - -
Car06g03401 355 MobiDBLite consensus disorder prediction 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03401 Car-Chr6 63784314 63789479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03401 43 251 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 43.694 5.61e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03401 - - mtr:MTR_4g055833 384.8