Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03380 ATGGTGAAGTTCACAGCTGATGAGTTACGTCGCATTATGGACTATAAGCACAACATTCGTAATATGTCTGTCATTGCTCATGTTGATCACGGAAAATCAACTTTGACAGATTCCCTTGTTGCTGCTGCTGGAATTATTGCACAGGAGGTTGCTGGAGATGTCCGGATGACAGATACTCGTGCAGATGAAGCTGAGCGTGGTATCACTATTAAGTCTACCGGTATCTCTCTATACTATGAAATGTCCGATGAGTCTTTGAAGAGTTACAAAGGGGAGCGCAATGGCAATGAGTATCTCATTAATCTCATTGATTCCCCTGGGCACGTCGACTTCTCATCTGAGGTTACTGCTGCACTCCGTATTACTGATGGAGCTCTAGTGGTGGTGGATTGTGTTGAGGGTGTTTGTGTCCAAACTGAAACTGTGCTGCGACAGGCCCTTGGTGAAAGGATCAGGCCTGTTCTAACCGTTAACAAGATGGATAGATGCTTCCTTGAACTCCAGGTGGATGGAGAGGAGGCTTATCAGACATTTCAGAGGATGATGGAGAGGCTCTGGGGTGAAAACTTCTTTGATCCAGCCACAAAAAAATGGACCACAAAGAATACTG 610 0.4541 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDESLKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRMMERLWGENFFDPATKKWTTKNT 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03380 203 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 203 IPR000795 GO:0003924|GO:0005525
Car06g03380 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 202 IPR027417 -
Car06g03380 203 Pfam Elongation factor Tu GTP binding domain 17 186 IPR000795 GO:0003924|GO:0005525
Car06g03380 203 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 180 203 - -
Car06g03380 203 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 180 - -
Car06g03380 203 Gene3D - 3 201 IPR027417 -
Car06g03380 203 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Car06g03380 203 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Car06g03380 203 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Car06g03380 203 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Car06g03380 203 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Car06g03380 203 PANTHER OS01G0742200 PROTEIN 180 203 - -
Car06g03380 203 PANTHER OS01G0742200 PROTEIN 1 180 - -
Car06g03380 203 TIGRFAM small_GTP: small GTP-binding protein domain 19 168 IPR005225 GO:0005525
Car06g03380 203 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03380 Car-Chr6 63239271 63241327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03380 1 183 Eukaryotic Initiation Factors Gene Family AT1G56070 95.082 5.44e-121 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03380 K03234 - oeu:111372993 352.829