Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03366 ATGACTATGATGGAGTGTGATGTAGAGGACAATAACTTCATTGAGTGGCTCAAACCCTCTTCCTCTCTTTCATATGAAActtcatcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttGTATCACTAAGAATGACCTAGTTCATGAAACTATTCAATTTTTTCCTATTTTGAGTGCAAAACCTTCAAAAGAGGAAGAACATGATCAATTACCACAAATGAAGGATTTTGAGGTGAAAGAAGAAAAGGTAGAAACACAAGTGAATGTAGCTTTGAACATTGGATTGCCTAACATTAAAGAAAATATTGATGAGAAGAAAGTTTTGCATGCTAAGGAAGAAGAAAAGGCTACTAAACAAACTTTCCATGGTTTCTCATTAAACAATAGAGAGAAAAGGTTTTGGATACCAACTTCTTCACAAATCCTTGTTGGGCCTATGCAGTTTGCTTGCTCCATATGCAACAAAACCTTCAATAGGTATAATAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGACGAAACTCACTTAGAGGAACACAACCAGGTGCAATGCTAAGGCTACCATGTTATTGTTGTGCTCAAGGTTGCAAAAACAACATCAATCATCCAAGAGCTAAGCCTTTGAAAGACTTTAGAACCCTCCAAACTCACTACAAAAGAAAACATGGGACTAAACCATTTATGTGTACAAAATGTGGGAAAACATTTGCCGTCAAAGGTGATTGGAGAACTCATGAAAAAAATTGTGGCAAATTGTGGTATTGCACTTGTGGTTCCGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCTTTTGGACAGGGTCATAATCGTCTTCCTAATTCTCTTGATCAAGCTTTCGAGGATGATAAGGAATGTGTTACTAGTTCTGAAGAAGAGGAAATTGTTCATACATAA 957 0.3417 MTMMECDVEDNNFIEWLKPSSSLSYETSSSSSSSSSSSSSSSSSSCITKNDLVHETIQFFPILSAKPSKEEEHDQLPQMKDFEVKEEKVETQVNVALNIGLPNIKENIDEKKVLHAKEEEKATKQTFHGFSLNNREKRFWIPTSSQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGRNSLRGTQPGAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCTKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHVRSFGQGHNRLPNSLDQAFEDDKECVTSSEEEEIVHT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03366 318 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Car06g03366 318 Pfam C2H2-type zinc finger 154 173 - -
Car06g03366 318 Gene3D Classic Zinc Finger 234 291 - -
Car06g03366 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 258 IPR013087 -
Car06g03366 318 Gene3D Classic Zinc Finger 153 176 - -
Car06g03366 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Car06g03366 318 SMART c2h2final6 238 258 IPR013087 -
Car06g03366 318 SMART c2h2final6 154 176 IPR013087 -
Car06g03366 318 SMART c2h2final6 201 233 IPR013087 -
Car06g03366 318 SUPERFAMILY beta-beta-alpha zinc fingers 224 258 IPR036236 -
Car06g03366 318 PANTHER ZINC FINGER PROTEIN WIP2 8 314 IPR043584 GO:0003700|GO:0010468
Car06g03366 318 SUPERFAMILY beta-beta-alpha zinc fingers 138 177 IPR036236 -
Car06g03366 318 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 8 314 - -
Car06g03366 318 MobiDBLite consensus disorder prediction 23 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03366 Car-Chr6 63043751 63047099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03366 9 309 C2H2 Transcription Factor Family AT1G08290 53.846 7.53e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g03366 zf-C2H2_6 0.0001 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03366 - - gmx:100802773 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02225 01 48075838 48078987 Car06g03366 06 63043751 63047099 PCT