Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03356 ATGCCACGGGGAAAGGCAAATTCTTCATCAGTTGGTAAGCCGTCTGAGCCTGAAAAGCCAGTTGAATCTGATGAGAAGGTCGACCTTGAAGAGGAAAACGATGCTGAGGAAGAAATGGAAGAAGAGGTCGAATATGAAGAAATAGAAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGATCCGGAGGAGGTGGAGGAAGTAGAAGAGGAAGAAGAAGAAGAGGAGGAGGAGGAAGAAGAGGTTGAAGAAGTGGAAGAAGATAATGCCGTGAAAAACCACGGCATTGATGATGTTGAAAAGAAAAAACATGCTGAACTTCTTTCTCTTCCTCCTCACATGTCTGAAGTCTACTTAGGGGGCATTCCTCTTGATGCCTCATCTGAAGATTTGAAAGATTTTTGTGAGCGTATTGGGGAAGTTGTACAGGTTCGAATAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGCTTTGCTTTTGTGACTTTTAGAAATGTAGAACTGGCTACTAAAGCCATTGAGGAGCTGAATAATACCGAATTTAAGGGTAAAAAAATAAAATGCTCGACATCTCAGCAAAAAAATCGTCTTTTTATTGGCAATATTCCTAGAAGCTGGGACGAAAAAGTCCTGAGGAAGGTTGTGACTGAGACTGGACCTGGAGTTACCGCTGTTGAACTAGTCAAGGATATGAAGAACATTAACAATAACCGTGGCTTTGCATTTATCGACTATTATAATAATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAACCCAACATTTAAGCTTGAAGACAACTCCCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATACCTCTGCTTCATCTCAGGTGAAGGCAGTATACGTGAAGAACCTTCCTAAGAATGTTACTCAAGAGCAGTTGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAGTCTGGTCAGGAAAAGAACAGAATCGGTTTTGTACATTTTGCAGAGAGATCAAATGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGATGGTCAAATGTTAGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAGAAAGCTGGAGTATCAAATATACAGAAGCAAGGATTGCTTCCTAGTTATCCGCCACACGTTGGTTATGGTTTGGTTGGGGGTGCATATGGTGCACTTGGTGCAGGTTATGGTGCTCCTGGTCTTGCACAGCCTTTGATGTATGGACCGGGTCAAACTCCTGCTGGAATGGCCATGATGCCGATGCTTCTGGCTGATGGACGCATCGGATATGTCTTGCAACAAGGGTTGCAGCCACAGCCACAGCCACAGGCACAAACCCCACCTTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGGAATACAGGCAGTTCAAGTAAAGGAAGGCATAACAATGATAGTGGAAGTGGTCAAGGGCGCAGATACCGCCCATATTAA 1659 0.387 MPRGKANSSSVGKPSEPEKPVESDEKVDLEEENDAEEEMEEEVEYEEIEEEEEVEEIEEEEVEEIEEDPEEVEEVEEEEEEEEEEEEEVEEVEEDNAVKNHGIDDVEKKKHAELLSLPPHMSEVYLGGIPLDASSEDLKDFCERIGEVVQVRIMKGKDSSENKGFAFVTFRNVELATKAIEELNNTEFKGKKIKCSTSQQKNRLFIGNIPRSWDEKVLRKVVTETGPGVTAVELVKDMKNINNNRGFAFIDYYNNACAEYSRQKMMNPTFKLEDNSPTVSWADPKNADTSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQMLECSLAKPQADQKAGVSNIQKQGLLPSYPPHVGYGLVGGAYGALGAGYGAPGLAQPLMYGPGQTPAGMAMMPMLLADGRIGYVLQQGLQPQPQPQAQTPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNTGSSSKGRHNNDSGSGQGRRYRPY 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03356 552 MobiDBLite consensus disorder prediction 525 545 - -
Car06g03356 552 Gene3D - 284 390 IPR012677 -
Car06g03356 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 194 IPR000504 GO:0003723
Car06g03356 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 365 IPR000504 GO:0003723
Car06g03356 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 267 IPR000504 GO:0003723
Car06g03356 552 SUPERFAMILY RNA-binding domain, RBD 293 385 IPR035979 GO:0003676
Car06g03356 552 PANTHER RNA RECOGNITION MOTIF 1 469 - -
Car06g03356 552 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 469 - -
Car06g03356 552 MobiDBLite consensus disorder prediction 512 552 - -
Car06g03356 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Car06g03356 552 MobiDBLite consensus disorder prediction 27 93 - -
Car06g03356 552 Gene3D - 65 202 IPR012677 -
Car06g03356 552 SMART rrm1_1 297 370 IPR000504 GO:0003723
Car06g03356 552 SMART rrm1_1 203 280 IPR000504 GO:0003723
Car06g03356 552 SMART rrm1_1 123 196 IPR000504 GO:0003723
Car06g03356 552 MobiDBLite consensus disorder prediction 1 105 - -
Car06g03356 552 Coils Coil 22 96 - -
Car06g03356 552 CDD RRM_SF 124 196 - -
Car06g03356 552 MobiDBLite consensus disorder prediction 451 476 - -
Car06g03356 552 Gene3D - 203 283 IPR012677 -
Car06g03356 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Car06g03356 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 284 IPR000504 GO:0003723
Car06g03356 552 SMART rrm2_1 297 370 IPR003954 GO:0003676
Car06g03356 552 SMART rrm2_1 123 196 IPR003954 GO:0003676
Car06g03356 552 SUPERFAMILY RNA-binding domain, RBD 119 287 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03356 Car-Chr6 62900717 62907482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03356 138 467 Eukaryotic Initiation Factors Gene Family AT4G34110 25.135 9.70e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03356 K13161 - gmx:100806658 570.081