Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03318 ATGTCGGCCAACCGAGCTCCTCCCGCCGCCTCCTCCTCCAACCCGCCGGACCAGATCATGCAATCCATGAAACGACAACTCCCGTTTTCCTCCATGAAACCTCCTTTTGTAGCTTCCGGAGATTATCACAGGTTTGGTCCCAACAACCGCCGGAATCTGGACCAAGAAACCGAAGCTATTGTTGTTAAGACTCCTCAATTGAAGCGGAAGAGTGAAACGGCCGATTTTGAAGCTGATTCAGGTGATAGGATGACTCCTGAATCCACCGAAGCAGCCAATAGTCCTTCTCAGACGCCTGCATCTGGTAAGACGGGGAAGGCAGGCAAATCCTCTAGGCTGACAAAATGCAACAGATCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTCCAGGAAACAATCTCACCCCGGCTGGTCCATGTCGATATGACAGCTCTTTAGGCCTGTTGACGAAAAAGTTCATCCATTTAATAAAACAAGCAGAGGATGGCATTCTTGATCTTAATAAAGCTGCTGACACATTGGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTGGATGTTTCAAAACCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATCGAGGAACGCCGGTTAGATGAACAGATAAGGGAGATGCAAGAAAGACTACGGGAACTTAGTGAAGATGAAAATAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAATTTGCCCTGCTTTCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGCACCACTTTGGAAGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGAAGGTACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGCCAATTTGAAGAGAAGTTTGAGGAGATCAACGGTGTTGATGTTGCACCCAAATTTCCATCCAGTCCAGAAGTTGACAAGCAGCAATCAACTTTGGTCCCAGAGGATAAAGGGAAGGAAGTAGAAGTGCAGGGACAAGATGGTGAAGGGCCTAGTTCAGATTTTACCAACTCTCACGACTTTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCGAGTGACGCTGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACTGACATGTGGAGAACAGAACCCACAGTTGAATGGAATGAACTCAATAAGCTTCAAGAAGATTATTGTACAGCTCCTGAACACACTACAACCCCAAGTCATCCATCGAACATAGGTGAAGTCTCTTCTGCATCCAACCCTCCTGATGGTTGA 1389 0.45 MSANRAPPAASSSNPPDQIMQSMKRQLPFSSMKPPFVASGDYHRFGPNNRRNLDQETEAIVVKTPQLKRKSETADFEADSGDRMTPESTEAANSPSQTPASGKTGKAGKSSRLTKCNRSGTQTPGSNIGSPPGNNLTPAGPCRYDSSLGLLTKKFIHLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEVENLTIEERRLDEQIREMQERLRELSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKFPSSPEVDKQQSTLVPEDKGKEVEVQGQDGEGPSSDFTNSHDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPTVEWNELNKLQEDYCTAPEHTTTPSHPSNIGEVSSASNPPDG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03318 462 Gene3D - 137 210 IPR036388 -
Car06g03318 462 Coils Coil 221 262 - -
Car06g03318 462 MobiDBLite consensus disorder prediction 63 84 - -
Car06g03318 462 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Car06g03318 462 Coils Coil 159 179 - -
Car06g03318 462 MobiDBLite consensus disorder prediction 1 28 - -
Car06g03318 462 MobiDBLite consensus disorder prediction 341 381 - -
Car06g03318 462 MobiDBLite consensus disorder prediction 435 462 - -
Car06g03318 462 MobiDBLite consensus disorder prediction 86 134 - -
Car06g03318 462 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Car06g03318 462 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Car06g03318 462 CDD E2F_DD 219 325 IPR032198 GO:0046983
Car06g03318 462 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Car06g03318 462 Gene3D - 215 325 - -
Car06g03318 462 PANTHER TRANSCRIPTION FACTOR E2FB 20 449 - -
Car06g03318 462 SUPERFAMILY E2F-DP heterodimerization region 222 325 IPR037241 -
Car06g03318 462 MobiDBLite consensus disorder prediction 353 367 - -
Car06g03318 462 PANTHER TRANSCRIPTION FACTOR E2F 20 449 IPR015633 GO:0000978|GO:0006357
Car06g03318 462 MobiDBLite consensus disorder prediction 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03318 Car-Chr6 62268410 62274016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03318 18 462 E2F-DP Transcription Factor Family AT5G22220 57.474 2.30e-161 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Car06g03318 E2F_CC-MB 5.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03318 K06620 - gmx:100819817 782.711