Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03305 ATGAAAGAACCCGTGACAACAATAACGGGCATAACATACGACAAAGAAAGCATCGAAAAGTGGTTAATGAAAGCCAAAAATTGTGTTTGTCCTGTAACCAATCAATCACTACCAAGAAGTTCAGAGTATTTGACACCAAATCACACTCTTAAAAGGCTAATTCAAGCTTGGATTTCATCCAATGAAGCTAAAGAAGTTGATCAAATTCAATCTCCAAAATCTTCTATTAATAGGACACATCTTAATAAACTTGTTAAGAATCTTGAGCTTCCTCATTGCTATGAAAATTCAATGGAGAAGATTCATGAGCTTGCTAAACAGAGTGAGAGAAACAGAACATGCATGGTTGAAGTTGGTGTAACCAAGGTTATGGTTATGGTAATTAAAAAAAGTTTCAAAGAAGGAAATGTTATTTGTTTGGAAGAAGGTTTGAAAATTATTCGACTTTTGTGGCATGAAAGCATGAATAAAAACATGATGAAGCCTTTGGTTGGAGAAAACATTGAATTCATCAACTCTTTGACTTGGATTTTGCAACTTCACATTGAAAATAACAATTTCAAAATAGTAAATGAAGCTATGCCACTATTAAAGTTGACAATTGATGTTATGGATTCAACCCTTTTAGGAAATTTAAACATTGATTTTTTCATAGCAATGGTTAGAGTACTTCAAAAGAGAGCATTATTCTCTAAACAAGCTATTAAATCGGCTTTACATGTGCTTATCGATACCTACCCTTTGGGTAGAAATCGAATAAGGATCGTGGAAGCAGGTGCGATTACCGAACTCATTGAACTTGAGCTCGAAAAACCGGAAAAGAATGTGACTGAACTTGTGTTTAATCTTTTGGCACATTTGTGCTCGTGTGCTGATGGAAGAGAACAATTTTTGAGACACGCAGCGGGTATAGCAATGATTACGAAGAGGATTCTTAGGGTTTCGACCGCAACTGATGATCGAGCGATTCAAGTGATTTTTATGATTGCAAGATATTCGAGTTCAAAAGATATTGTTTTAGAGATGTTGAGAGTTGGAGCAGTTTCAAAGCTTTGCATGGTAATGCAAGCGGATTGTTCTTCTTACTTGAAAGAGAAAGCAAGAGACATACTTAGGTTACACTCCTCTACTTGGAATAATTCTCCTTGCATACAAGTGTACTTAATGACTAGGCACCAAAGGTGA 1185 0.3561 MKEPVTTITGITYDKESIEKWLMKAKNCVCPVTNQSLPRSSEYLTPNHTLKRLIQAWISSNEAKEVDQIQSPKSSINRTHLNKLVKNLELPHCYENSMEKIHELAKQSERNRTCMVEVGVTKVMVMVIKKSFKEGNVICLEEGLKIIRLLWHESMNKNMMKPLVGENIEFINSLTWILQLHIENNNFKIVNEAMPLLKLTIDVMDSTLLGNLNIDFFIAMVRVLQKRALFSKQAIKSALHVLIDTYPLGRNRIRIVEAGAITELIELELEKPEKNVTELVFNLLAHLCSCADGREQFLRHAAGIAMITKRILRVSTATDDRAIQVIFMIARYSSSKDIVLEMLRVGAVSKLCMVMQADCSSYLKEKARDILRLHSSTWNNSPCIQVYLMTRHQR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03305 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 1 391 - -
Car06g03305 394 PANTHER WDSAM1 PROTEIN 1 391 IPR045185 GO:0061630
Car06g03305 394 SUPERFAMILY RING/U-box 1 65 - -
Car06g03305 394 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Car06g03305 394 SUPERFAMILY ARM repeat 220 375 IPR016024 -
Car06g03305 394 Pfam U-box domain 1 62 IPR003613 GO:0004842|GO:0016567
Car06g03305 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Car06g03305 394 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
Car06g03305 394 Gene3D - 218 385 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03305 Car-Chr6 61951988 61953298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03305 1 384 U-box Gene Family AT2G35930 35.459 2.96e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03305 - - gmx:100811293 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03305 06 61951988 61953298 Car06g03305 06 61951988 61953298 ECH