Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03294 ATGTCAATGGACATGATGGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGTGGTGAATGTTCCATATAGCAGTTTGCAAACCATGGTTACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTTGCATCACTTCAACCATTTTCTCCTCCACTCCCTCAGCAAATAGTTCTTGAAGAACCAAGCAACAAGGAAATGGGATCATCTTCAAAATGCAACAAAATAGCATCAACATTTGAACCAGTAGTAGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGGGTTCCTTCTGCTTATAACCGGTTCATTAAAGAAGAAATTCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGAGAGGCTTTTAGCTCAGCAGCAAAAAATTGGGCACATTTCCCCCATATTCATCACTTTGGCAAGCAACAAGCAAAATTGGACCATGGCGAAGCAACTCATGAAAAGTCTAATGGATTCTACTGA 534 0.4026 MSMDMMATERVCYVHCNFCNTILVVNVPYSSLQTMVTVRCGHCANLLSVNMVASLQPFSPPLPQQIVLEEPSNKEMGSSSKCNKIASTFEPVVEHEQPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHHFGKQQAKLDHGEATHEKSNGFY 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03294 177 SUPERFAMILY HMG-box 102 151 IPR036910 -
Car06g03294 177 Pfam YABBY protein 7 155 IPR006780 GO:0007275
Car06g03294 177 Gene3D High mobility group box domain 107 171 IPR036910 -
Car06g03294 177 PANTHER PROTEIN YABBY 6-RELATED 1 177 IPR006780 GO:0007275
Car06g03294 177 MobiDBLite consensus disorder prediction 158 177 - -
Car06g03294 177 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03294 Car-Chr6 61662126 61667963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03294 1 177 C2C2-YABBY Transcription Factor Family AT1G08465 56.684 1.26e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Car06g03294 YABBY 3.9e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03294 K25796 - gmx:100500091 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02277 01 48535615 48542102 Car06g03294 06 61662126 61667963 PCT