Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03292 ATGAGTGATATAAGGAAGTGGTTCATGAAATCACATGAAAAGACTAACAATGCCGCCGCTAACTCCAATCAACCCAAGAAGCCTTCTCCGGTTAAACCCGACCCGGACAAAACGGTACCTGAAGGTCAATCAAGTTCGGGCAGGAGGAAAACTAGCAAATATTTTAATACAGATAAACCGAAGCCAAAAGATGAGATAGAAACGGGGGCACTCCCTGCTAAAAGGAAGACTATGAAAGGCAATGAGGAAGATGATGGAGATGACTCTGTTCCATCCACAAATAAAAAGAAGTTAGCTGGTTCCACTCCTACAAAAAAATTGAAGAGTGGGTCTGGAAGGGGGATCCCCCAGAAATCTGTAGATTTAGAAGAAAGTGATGAAGACAATGAGAAAGACGATGTGTCTCCCATTAAATCTAGTGGAAGGGGTCGTGGTGGAAGAGGGGCATCAACACAAGCAACTGGTGGGAGAGGCCGAGGGGTTGGTCGGGGAATCCCCAAGAAGTCTGCAGATTTGGAAGAAAGTGATGAAGATGATGAGAAAAATGCTGTGTCTGCTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCCTCTACACAAGCAGCTGGTGGGAGGGGCCGAGGGGGTGGTAGGGGGGGATTCATGAATTTCGGTGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGTAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGTTTAACTTTTGTAATCAGTGGAACGCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACCACATCAGTCAGCAAGAAAACAAATTATTTGTTATGTGACGATGATATTGGGGGAAGGAAGTCTGCAAAAGCAAAAGAGCTAGGAACTTCATTCCTCACAGAGGATGGGTTGTTTGATATTATTCGGGCTTCAAAACCTGCAAAAACTACCTCAAAACCTGCAAAAGGTCCTTCGCAAGAGGAATGTAAGAAATCTGTGAATCAGGCTGTTGCAGTGCCAGCCCAGTCAAAAGGTCCTCTGAAAGCAGAAACAAAGGTTTCTTTGTCTTCATGCTCACCTTCCAAGCAAGCCAAGGCCAAGCCTAAAACCGTTCAGTCTAATTTGATGTGGACAGAGAAACATCGACCTACAAATCCAAAGGATATCATAGGGAATCAATCACTTGTTTCACAGCTTCGAAATTGGTTGAAAGGTTGGCATGAGCAATTTTCTAATACTGGGGGAAATAAAAAACAAGGAAAAAAGCTGAATGACCCTGTTTCCAAAAAGGCCGTCTTGTTAAGTGGAACCCCTGGTATAGGCAAAACAACTTCAGCGAAGCTGGTGTGTCAGGAGCTGGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAATGCAAATTCTATCAAGGAACTTGTAACCAATGAGGCCCTTGGTACTAATATGGATAGGTCAAAGCTGTCCAAAACTGTGCTCATTATGGACGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTATAGCCAGAAACTAAAAAGCCTAGTGAACTACTGCTTGCTTCTTAGTTATCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTTATGGATGTTGCAAAGGCCGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCTCTAAACCAGTTACAATATATGGGCCTCTCCATGTCAGTTATCAACTATGATGATATTAGGAAGCGCTTACTTACCAATGCAAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGAAAGATGAAAATGGACGAGAGGATTAATCTCAGCATGAGTGATCCCGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTCGGCTGGTAAGGATGACAATGGCGTAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTATCTCAAACTAGTTCTGTTGCATCATGTATACTTCCTGCTTCATTATTACATGGGCAAAGAGAAATACTTGAACAGGGAGAACGAAATTTTAACCGATTTGGTGGGTGGCTAGGGAAGAACTCGACAATGGGCAAAAACACGAGGCTTATGGATGACCTGCACGTTCACATTCTTGCATCTCGTGAATCTAGTTCGGGAAGGGTTACTATTCGCTTGGAATACCTTAGTCTTCTTCTTAAAAAATTGACAGAACCTCTCAAAGTCCTGCCTAAGGCCGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACATACTCAATCAGTCAGGAAGACTTTGATACTATAGTAGAGTTATCGAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACTGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAAACTCGGACGGTTCGAGCTGCAGATCTAATTAATCTTCCTGGTATTAAAAAGGCACCTAAGAAGCGCATTGCTGCTATTTTAGAACCAGCTGATGAAGGAACGGAACAAGGTAATGGTGGCGACGCCTTGGACGAGAGTGAAGAAGAGAACACCTCTGACAATGATGAGTCAGAAGACGCCACAACTGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAATTCAAAGGCCATGCACGTACAATTTGAATTGAAGGGAACTGGAAATTCAAGTTCCAAGAAGGCATCTGGTGGTAGAGGTAAAGGTGCTTCAGCATCTGCGCAGAAGGTTGCTCAAACGTCAAAGGCTCCTGCAAAAAGAAAAAGGTGA 2994 0.4332 MSDIRKWFMKSHEKTNNAAANSNQPKKPSPVKPDPDKTVPEGQSSSGRRKTSKYFNTDKPKPKDEIETGALPAKRKTMKGNEEDDGDDSVPSTNKKKLAGSTPTKKLKSGSGRGIPQKSVDLEESDEDNEKDDVSPIKSSGRGRGGRGASTQATGGRGRGVGRGIPKKSADLEESDEDDEKNAVSAKSGGRGRGGRGASTQAAGGRGRGGGRGGFMNFGERKDPPHKGEKVVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTTSVSKKTNYLLCDDDIGGRKSAKAKELGTSFLTEDGLFDIIRASKPAKTTSKPAKGPSQEECKKSVNQAVAVPAQSKGPLKAETKVSLSSCSPSKQAKAKPKTVQSNLMWTEKHRPTNPKDIIGNQSLVSQLRNWLKGWHEQFSNTGGNKKQGKKLNDPVSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEALGTNMDRSKLSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKFMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIRKRLLTNAKDEDISPFTAVDKLFGFNAGKMKMDERINLSMSDPDLVPLLIQENYINYRPSSAGKDDNGVKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCILPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNTRLMDDLHVHILASRESSSGRVTIRLEYLSLLLKKLTEPLKVLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGILPAVKSALTKAYKEQSKTRTVRAADLINLPGIKKAPKKRIAAILEPADEGTEQGNGGDALDESEEENTSDNDESEDATTGEKLKSELQSLNSKAMHVQFELKGTGNSSSKKASGGRGKGASASAQKVAQTSKAPAKRKR 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03292 997 MobiDBLite consensus disorder prediction 941 972 - -
Car06g03292 997 Gene3D BRCT domain 212 314 IPR036420 -
Car06g03292 997 SUPERFAMILY post-AAA+ oligomerization domain-like 640 785 IPR008921 GO:0003677|GO:0006260
Car06g03292 997 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 11 970 - -
Car06g03292 997 MobiDBLite consensus disorder prediction 1 235 - -
Car06g03292 997 ProSiteProfiles BRCT domain profile. 235 316 IPR001357 -
Car06g03292 997 CDD AAA 432 532 - -
Car06g03292 997 PANTHER REPLICATION FACTOR C SUBUNIT 1 11 970 - -
Car06g03292 997 Gene3D - 379 568 IPR027417 -
Car06g03292 997 SMART AAA_5 432 570 IPR003593 -
Car06g03292 997 Gene3D - 641 750 - -
Car06g03292 997 PIRSF RFC1 1 972 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Car06g03292 997 MobiDBLite consensus disorder prediction 52 92 - -
Car06g03292 997 MobiDBLite consensus disorder prediction 357 376 - -
Car06g03292 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 629 IPR027417 -
Car06g03292 997 Pfam BRCA1 C Terminus (BRCT) domain 237 312 IPR001357 -
Car06g03292 997 MobiDBLite consensus disorder prediction 903 997 - -
Car06g03292 997 CDD BRCT_RFC1 235 313 - -
Car06g03292 997 MobiDBLite consensus disorder prediction 219 233 - -
Car06g03292 997 SMART BRCT_7 237 315 IPR001357 -
Car06g03292 997 MobiDBLite consensus disorder prediction 164 186 - -
Car06g03292 997 Pfam Replication factor RFC1 C terminal domain 709 871 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Car06g03292 997 CDD HLD_clamp_RFC 569 629 - -
Car06g03292 997 Pfam ATPase family associated with various cellular activities (AAA) 436 535 IPR003959 GO:0005524|GO:0016887
Car06g03292 997 MobiDBLite consensus disorder prediction 94 108 - -
Car06g03292 997 Gene3D - 569 639 - -
Car06g03292 997 MobiDBLite consensus disorder prediction 916 932 - -
Car06g03292 997 SUPERFAMILY BRCT domain 235 317 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03292 1 951 Core DNA Replication Machinery Family AT5G22010 64.412 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03292 K10754 - gmx:100790070 1353.19