Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03286 ATGGCGGAACCTTCTACCACCTCTCCTCCACCACCGCCGCCGTCGACTAAGAGCTGGGCCGACCAAGCTGAAGAAGAAACCAATCCATCCTCAACCTCCGCCGCAGAGCCCTCGACTCCGTCGCTCGACGAATTAGCAATCGACGACAACAACAATCCTCATAAGTTATTGGACGATCCCGATGACTCCAACATTCAAGCGGTTACCTCCGGTGACACACCGTATACGTCCGCGGCAACGTTCGAAGATCTTTCCCTCTCGCCGGAGCTTCTGAAGGGTCTCTATGTGGAGATGAAGTTTCAAAAACCTAGTAAAATACAAGCTATAAGCTTGCCGATGATTCTTAACCCTCCACATAGGGATTTGATTGCACAGGCACATAATGGTTCTGGGAAAACCACTTGTTTCGTGCTTGGGATGCTTAGTCGTGTTGATCCTAACTTGCAAGCTCCTCAAGCTCTCTGTATTTGCCCCACTAGAGAGTTAGCTATTCAGAATGTTGAGGTTCTCCGTAAGATGGGAAAGTACACGGGGATTAGTTCAGAATGTGCAGTTCCGATGGACAGCAGGGATTCAACTCCAATATCGAAACGGGCGCCTATTATGGCTCAGGTGGTTATTGGTACTCCTGGCACAATTAAGAAATGGATGACTTATAAGAAACTTGGGGTGACGAGATTGAAGATTCTCGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCTCTGAGGATAATGAAAGAAATAGAAAAATTCAATTCAAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACTGTCAAGAATTTCGTTACAAGGATTGTTGAGAAGAAGGAGCATAATAAACTTTTTGTGAAGAAAGAGGATCTATCTTTAGATGCAGTGAAGCAGTACAAAGTGCGTTGTCCTGATGAACTCGCTAAGATTGAAGTGATAAGAAGTTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAATAGTGCAAAAATGTTGCATAAAGCTCTTGTTGATTTAGGCTATGAGGTTACTTCCATACAAGGTGCTCTTGAACATGAAGAAAGAGACAAGATCGTCAAAGAGTTCAAAGATGGTTTGACTCAGGTTCTTATATCAACTGACGTCCTTGCCCGTGGATTTGATCAGCAACAGGTTAATTTGGTTATCAACTATGATCTTCCACTGAAGTACGCTGCTGAGTACATCCGTGGCCGTGATCCTGAGCCTGATTTTGAGGTGTATTTGCACAGGGTTGGTCGGGCTGGGCGATTTGGGCGCAAGGGGGCTGTATTTAACCTGCTATGCGATGAAAGGGATGAAAAGCTCATGTCAAAGATTGAAAACCATTTTGGCACCCACGTAAAAGAGGTACGAGAAAAAAGTGTCGAAGACTATAAAGCTGCTCTTAAGGAAGCTGGTTTGCTCGTGTGA 1476 0.4397 MAEPSTTSPPPPPPSTKSWADQAEEETNPSSTSAAEPSTPSLDELAIDDNNNPHKLLDDPDDSNIQAVTSGDTPYTSAATFEDLSLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPNLQAPQALCICPTRELAIQNVEVLRKMGKYTGISSECAVPMDSRDSTPISKRAPIMAQVVIGTPGTIKKWMTYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSNCQVLLFSATFNDTVKNFVTRIVEKKEHNKLFVKKEDLSLDAVKQYKVRCPDELAKIEVIRSYIFEIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGALEHEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKYAAEYIRGRDPEPDFEVYLHRVGRAGRFGRKGAVFNLLCDERDEKLMSKIENHFGTHVKEVREKSVEDYKAALKEAGLLV 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03286 491 SMART ultradead3 99 306 IPR014001 -
Car06g03286 491 PANTHER DEAD-BOX HELICASE DBP80 58 470 - -
Car06g03286 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 481 IPR001650 -
Car06g03286 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 457 IPR027417 -
Car06g03286 491 MobiDBLite consensus disorder prediction 20 39 - -
Car06g03286 491 CDD DEADc_DDX19_DDX25 86 283 - -
Car06g03286 491 Gene3D - 296 488 IPR027417 -
Car06g03286 491 Pfam DEAD/DEAH box helicase 105 277 IPR011545 GO:0003676|GO:0005524
Car06g03286 491 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 470 - -
Car06g03286 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 108 IPR014014 GO:0003724
Car06g03286 491 CDD SF2_C_DEAD 303 449 - -
Car06g03286 491 MobiDBLite consensus disorder prediction 1 63 - -
Car06g03286 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 289 IPR014001 -
Car06g03286 491 Pfam Helicase conserved C-terminal domain 318 440 IPR001650 -
Car06g03286 491 MobiDBLite consensus disorder prediction 1 17 - -
Car06g03286 491 Gene3D - 58 295 IPR027417 -
Car06g03286 491 SMART helicmild6 345 440 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03286 Car-Chr6 61470904 61476946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03286 80 472 Eukaryotic Initiation Factors Gene Family AT1G72730 35.787 8.64e-68 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03286 K18655 - gmx:100784739 759.599