Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03281 ATGGAAGAAGGCATAATTAAGAATGAGAATGTTGGTGTTGAAGAGAAGAAAGAAATTGAAAGACACAATTTTAGTCCTCCAAAGAATGTTAATGTTGATCAAGTTGAGGCTACAATGAGGAAAGCAAGAGTTTCTGTTAGAGCTAGATCAGATGCACCCATTATTAGTGATGGATGTCAATGGAGAAAGTATGGACAAAAAATGGCGAAAGGAAATCCATGTCCTCGAGCTTATTATCGGTGTACTATGTCTTCTGCTTGTCCGGTTCGAAAACAGGTACAAAGATGTGCTGAAGACAGAACAGTCCTAATAACAACATATGAAGGAAATCACAACCATGCATTACCACCAGCAGCAAGAGGAATGGTAGAaacaacatcatcagcagcaacaatgctactttcaggatcaacatcaaGCACTGATCATGGATTAATGAATCCAAATTTCCTAACAAGAACATTCCTTCCTTGTTCTTCAACTATGGCAACTATTTCAGCATCAGCTCCATTCCCAACTATTACACTTGACCTTACACAATCTCCAAATCCTCTTCAGTTACAAAATTTTGCCAATTCCTCTGCTCCTTCATTAATTCCTCAGATTTTTGGTCAGGTACCTAATAATTTTCAACAATCAAAATTCTCTGGCCTACAATTGTCACAAAATTCAATTGATTCTTCACATTTGGCTTCAATACCAAACCTTGCTGATTTTAGTGCTGCCATTACTAAGGATCCAAATTTCACTGCTGCTTTGGCTGTTGCTATTACTTCAATTTTTGGTGGTGTTcaacaaaacaacaacactaatgataataataacaatgtcacatcatgcaacaacaatggtaatgtcacaagtggcaacaataataataatgggaagcaataa 894 0.3132 MEEGIIKNENVGVEEKKEIERHNFSPPKNVNVDQVEATMRKARVSVRARSDAPIISDGCQWRKYGQKMAKGNPCPRAYYRCTMSSACPVRKQVQRCAEDRTVLITTYEGNHNHALPPAARGMVETTSSAATMLLSGSTSSTDHGLMNPNFLTRTFLPCSSTMATISASAPFPTITLDLTQSPNPLQLQNFANSSAPSLIPQIFGQVPNNFQQSKFSGLQLSQNSIDSSHLASIPNLADFSAAITKDPNFTAALAVAITSIFGGVQQNNNTNDNNNNVTSCNNNGNVTSGNNNNNGKQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03281 297 Pfam WRKY DNA -binding domain 57 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car06g03281 297 MobiDBLite consensus disorder prediction 268 297 - -
Car06g03281 297 PANTHER OS05G0567200 PROTEIN 19 285 - -
Car06g03281 297 SMART WRKY_cls 55 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car06g03281 297 Gene3D WRKY domain 40 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car06g03281 297 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 19 285 IPR044810 GO:0003700
Car06g03281 297 ProSiteProfiles WRKY domain profile. 50 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car06g03281 297 SUPERFAMILY WRKY DNA-binding domain 48 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03281 Car-Chr6 61421248 61423327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03281 36 261 WRKY Transcription Factor Family AT4G04450 64.557 8.14e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car06g03281 WRKY 6.7e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03281 06 61421248 61423327 Car06g03281 06 61421248 61423327 ECH
Car06g03281 06 61421248 61423327 Car01g00679 01 5666373 5669334 ECH