Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03280 ATGAAGTGGAATAGAGGCCATACCATTGGCCAAGGCTCAACCGCCACCGTCTCCCTCGCCACCCTAAATGGCAAAATCTTCGCCGTGAAGTCAACTGAACTATCGTGTTCTCAACCGCTAAAGAGAGAACAAAGAATTCTATCTTCTCTATGTTATCCAAATCCTTATGTGGTTAATTATAAAGGGTGTGACATTACTATGGAAAACAACAAACTCATGTACAATCTTTTTATGGAGTATATGCCATTCGACACACTTAGCCAGCACGGTGGCCTGCTCAGTGAACAGGCCATCGTGTGCTACACAAGACAAATTGTAAAAGGATTAGAGCATTTACATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTGATAGGTGAAGATGGAGCCAAAATTGGAGACTTTGGATGTGCTAAGAGTGTCAGTGAAGCCGTCGCGCCAATTCGGGGAACTCCATTGTTTATGGCCCCCGAGGTGGCGCGTGGAGAAGAACAAGAGTGTCCTAGTGATATTTGGTCACTTGGTTGCACTTTGATTGAAGTATCCAATAATTCTACACCATGGCCAAATGTAGGAAACCCAATTTCAGCACTTTATCATATAGCATATTCCAATGAAGTTCCTAAGATTCCATCTTTTCTATCTAATCAAGCTAAGGACTTTTTAGGGAAATGTTTAAGGAGGAATCCAAAGGAGAGGTTTACAGCTAGTCAACTTTTGAATCATCCTTTTCTTGGAGAGTTATGTTCCAATGATAAACAAGTTGTGGACTTTAATTCAAGTTCACCAACTAGTATTCTTGATCAAGGCTTTTGGAATTCTATGGAAGAATCAAAAAGCGTTAGCCTTGGAAATTGGATTCACACAACAAGTTTTGATGAGAACTCTATTGCTAATAGGATCAAAAGGTTGGCAGGGGAACCCTGTTGTGCATGGTGGCATGATGATAATGAGAATGAGAGTTGGATCACAATTAGAGGGAAAGAAGGATGTGAAGTTGATGTTTTTTGCACTTGTGGGTCAGAGATAAGTTCAACTAGTGATGAGTTGGATCTGCAAGGGTTGGCAAAAAGTAATGTGAAATATAGAATTAATGGACATTTTTGTAATGATCACATTCACATTTGTAGGGATGCTAGTTTTGTAGGTAGTGTTAGTAATCTTAATTTTCAGCCAGGCATTGTTGAGATGCTACTACCATCAACATTAGATGTTTTATGA 1233 0.3998 MKWNRGHTIGQGSTATVSLATLNGKIFAVKSTELSCSQPLKREQRILSSLCYPNPYVVNYKGCDITMENNKLMYNLFMEYMPFDTLSQHGGLLSEQAIVCYTRQIVKGLEHLHSKGLVHCDIKGANILIGEDGAKIGDFGCAKSVSEAVAPIRGTPLFMAPEVARGEEQECPSDIWSLGCTLIEVSNNSTPWPNVGNPISALYHIAYSNEVPKIPSFLSNQAKDFLGKCLRRNPKERFTASQLLNHPFLGELCSNDKQVVDFNSSSPTSILDQGFWNSMEESKSVSLGNWIHTTSFDENSIANRIKRLAGEPCCAWWHDDNENESWITIRGKEGCEVDVFCTCGSEISSTSDELDLQGLAKSNVKYRINGHFCNDHIHICRDASFVGSVSNLNFQPGIVEMLLPSTLDVL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03280 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Car06g03280 410 Pfam Protein kinase domain 5 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03280 410 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Car06g03280 410 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Car06g03280 410 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Car06g03280 410 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 343 - -
Car06g03280 410 SMART serkin_6 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03280 410 CDD STKc_MAPKKK 2 249 - -
Car06g03280 410 ProSiteProfiles Protein kinase domain profile. 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03280 410 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03280 Car-Chr6 61395244 61396533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03280 3 354 MAP Kinase Kinase Kinase AT5G55090 46.486 2.16e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Car06g03280 Pkinase 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03280 K20716 - gmx:100794648 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03280 06 61395244 61396533 Car06g03280 06 61395244 61396533 ECH
Car06g03280 06 61395244 61396533 Car01g00677 01 5642959 5646456 ECH
Car01g02290 01 48671847 48673084 Car06g03280 06 61395244 61396533 PCT